Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18780 | 5' | -57.8 | NC_004683.1 | + | 19815 | 0.69 | 0.374743 |
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Target: 5'- -cGAUCAGCGACAUcucgcAGGCCaucuUCGCGg -3' miRNA: 3'- auCUAGUCGCUGUAc----UCCGGc---GGCGC- -5' |
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| 18780 | 5' | -57.8 | NC_004683.1 | + | 6350 | 0.71 | 0.302068 |
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Target: 5'- gGGGUCAGCcaccgagggGGCGUGGGGaUCGcCCGCGc -3' miRNA: 3'- aUCUAGUCG---------CUGUACUCC-GGC-GGCGC- -5' |
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| 18780 | 5' | -57.8 | NC_004683.1 | + | 23813 | 0.72 | 0.247013 |
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Target: 5'- gGGGUCGGCG-CcgGGGugguGCCGCCGCc -3' miRNA: 3'- aUCUAGUCGCuGuaCUC----CGGCGGCGc -5' |
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| 18780 | 5' | -57.8 | NC_004683.1 | + | 35028 | 0.73 | 0.234615 |
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Target: 5'- ---uUCAGCuGACGgccGAGGCCGUCGCa -3' miRNA: 3'- aucuAGUCG-CUGUa--CUCCGGCGGCGc -5' |
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| 18780 | 5' | -57.8 | NC_004683.1 | + | 42308 | 0.73 | 0.228615 |
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Target: 5'- gUGGAUC-GCGGCGUGGGuGuUCGCCGUGa -3' miRNA: 3'- -AUCUAGuCGCUGUACUC-C-GGCGGCGC- -5' |
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| 18780 | 5' | -57.8 | NC_004683.1 | + | 43477 | 0.73 | 0.205899 |
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Target: 5'- -cGAUCAGCcugcccuCGUgGGGGCUGCCGCGa -3' miRNA: 3'- auCUAGUCGcu-----GUA-CUCCGGCGGCGC- -5' |
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| 18780 | 5' | -57.8 | NC_004683.1 | + | 46605 | 0.75 | 0.166292 |
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Target: 5'- gAGggCcGCGACGgcaAGGCCGCCGCGc -3' miRNA: 3'- aUCuaGuCGCUGUac-UCCGGCGGCGC- -5' |
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| 18780 | 5' | -57.8 | NC_004683.1 | + | 17443 | 1.08 | 0.000651 |
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Target: 5'- gUAGAUCAGCGACAUGAGGCCGCCGCGg -3' miRNA: 3'- -AUCUAGUCGCUGUACUCCGGCGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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