miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18781 5' -54.3 NC_004683.1 + 42725 0.66 0.781877
Target:  5'- aCUCaUCGGCg--GCC---GCCGAUCUc -3'
miRNA:   3'- -GAGaAGCCGaaaCGGcagCGGCUAGA- -5'
18781 5' -54.3 NC_004683.1 + 9557 0.66 0.778874
Target:  5'- --gUUCGGCagcucccacgccucGCCGUCGCCGAg-- -3'
miRNA:   3'- gagAAGCCGaaa-----------CGGCAGCGGCUaga -5'
18781 5' -54.3 NC_004683.1 + 52185 0.66 0.751263
Target:  5'- aUCUgccguggUGGCUcgacacgcucgaUgagGCCGUCGUCGGUCg -3'
miRNA:   3'- gAGAa------GCCGA------------Aa--CGGCAGCGGCUAGa -5'
18781 5' -54.3 NC_004683.1 + 25651 0.67 0.740798
Target:  5'- ----aCGGCcgccgUGCCGUUGCCGAc-- -3'
miRNA:   3'- gagaaGCCGaa---ACGGCAGCGGCUaga -5'
18781 5' -54.3 NC_004683.1 + 41283 0.67 0.719547
Target:  5'- gUCcUCGGCg--GCCuUCGCCGcGUCg -3'
miRNA:   3'- gAGaAGCCGaaaCGGcAGCGGC-UAGa -5'
18781 5' -54.3 NC_004683.1 + 34347 0.67 0.719547
Target:  5'- --gUUCGGCUUcGCCGUgccaGCCGAc-- -3'
miRNA:   3'- gagAAGCCGAAaCGGCAg---CGGCUaga -5'
18781 5' -54.3 NC_004683.1 + 54560 0.67 0.708784
Target:  5'- uUCgaggUCGauGCUguaGCCGUCGCCGAcCUu -3'
miRNA:   3'- gAGa---AGC--CGAaa-CGGCAGCGGCUaGA- -5'
18781 5' -54.3 NC_004683.1 + 31614 0.67 0.697946
Target:  5'- gCUCgcCGGCgugGCCGaCGCCGAc-- -3'
miRNA:   3'- -GAGaaGCCGaaaCGGCaGCGGCUaga -5'
18781 5' -54.3 NC_004683.1 + 13003 0.67 0.687043
Target:  5'- ----gCGGCUUccUGCCGggCGCCGGUg- -3'
miRNA:   3'- gagaaGCCGAA--ACGGCa-GCGGCUAga -5'
18781 5' -54.3 NC_004683.1 + 56854 0.68 0.676087
Target:  5'- cCUCgguagCGGCUgcgGUCGUCGUCG-UCg -3'
miRNA:   3'- -GAGaa---GCCGAaa-CGGCAGCGGCuAGa -5'
18781 5' -54.3 NC_004683.1 + 24198 0.68 0.65406
Target:  5'- aCUUgccgCGGC--UGCCGUCGUCGAcCUu -3'
miRNA:   3'- -GAGaa--GCCGaaACGGCAGCGGCUaGA- -5'
18781 5' -54.3 NC_004683.1 + 23816 0.68 0.64301
Target:  5'- aUCggggUCGGCgccgggguggUGCCGcCGCCGGUg- -3'
miRNA:   3'- gAGa---AGCCGaa--------ACGGCaGCGGCUAga -5'
18781 5' -54.3 NC_004683.1 + 12754 0.69 0.609842
Target:  5'- cCUCggaUCGGgUUaGCCG-CGCUGAUCg -3'
miRNA:   3'- -GAGa--AGCCgAAaCGGCaGCGGCUAGa -5'
18781 5' -54.3 NC_004683.1 + 47230 0.69 0.609842
Target:  5'- cCUCgUCGGU---GUCGUCGCCGaAUCa -3'
miRNA:   3'- -GAGaAGCCGaaaCGGCAGCGGC-UAGa -5'
18781 5' -54.3 NC_004683.1 + 17355 0.69 0.565929
Target:  5'- aUCUUccgCGGCg--GCCucauGUCGCUGAUCUa -3'
miRNA:   3'- gAGAA---GCCGaaaCGG----CAGCGGCUAGA- -5'
18781 5' -54.3 NC_004683.1 + 6013 0.7 0.533531
Target:  5'- -----gGGCUc-GCCGUUGCCGAUCg -3'
miRNA:   3'- gagaagCCGAaaCGGCAGCGGCUAGa -5'
18781 5' -54.3 NC_004683.1 + 7916 0.71 0.491429
Target:  5'- ----aCGGCggaacucGCCGUCGUCGAUCUc -3'
miRNA:   3'- gagaaGCCGaaa----CGGCAGCGGCUAGA- -5'
18781 5' -54.3 NC_004683.1 + 15669 0.71 0.470959
Target:  5'- aUCUUCGaGUcugcgUUGCCGcCGUCGAUCg -3'
miRNA:   3'- gAGAAGC-CGa----AACGGCaGCGGCUAGa -5'
18781 5' -54.3 NC_004683.1 + 25483 0.71 0.460887
Target:  5'- -aCcgCGGCgcugGCCGUCGCCGucuUCUa -3'
miRNA:   3'- gaGaaGCCGaaa-CGGCAGCGGCu--AGA- -5'
18781 5' -54.3 NC_004683.1 + 23005 0.72 0.45093
Target:  5'- uUCUU-GGC--UGCCGUCGuuGAUCa -3'
miRNA:   3'- gAGAAgCCGaaACGGCAGCggCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.