miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18782 3' -59.5 NC_004683.1 + 32923 0.66 0.512314
Target:  5'- -cUCGCCC-UGGCCGgauuccgcuuGGCCGagaucagcggucuGCGAUGg -3'
miRNA:   3'- ccAGCGGGaACUGGU----------CCGGC-------------CGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 13133 0.66 0.513328
Target:  5'- cGUCGCCUgc-AUguGGCUGGCGuUGa -3'
miRNA:   3'- cCAGCGGGaacUGguCCGGCCGCuAC- -5'
18782 3' -59.5 NC_004683.1 + 44939 0.66 0.533761
Target:  5'- -cUCGgCCUccaGGCCGGGCCaccacGGCGAUu -3'
miRNA:   3'- ccAGCgGGAa--CUGGUCCGG-----CCGCUAc -5'
18782 3' -59.5 NC_004683.1 + 22498 0.67 0.444649
Target:  5'- cGUCGCC---GACCAGGCCGaGcCGGa- -3'
miRNA:   3'- cCAGCGGgaaCUGGUCCGGC-C-GCUac -5'
18782 3' -59.5 NC_004683.1 + 26286 0.67 0.435257
Target:  5'- cGG-CGUUCUcGACCuGGCgGGCGAg- -3'
miRNA:   3'- -CCaGCGGGAaCUGGuCCGgCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 21286 0.68 0.416824
Target:  5'- uGGUCGCCCagcAgCAGGCgGGgGAUc -3'
miRNA:   3'- -CCAGCGGGaacUgGUCCGgCCgCUAc -5'
18782 3' -59.5 NC_004683.1 + 17828 1.09 0.000451
Target:  5'- gGGUCGCCCUUGACCAGGCCGGCGAUGc -3'
miRNA:   3'- -CCAGCGGGAACUGGUCCGGCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 5787 0.78 0.085816
Target:  5'- uGGUUGCCCU-GGCCGGuGCCGGUcGUGa -3'
miRNA:   3'- -CCAGCGGGAaCUGGUC-CGGCCGcUAC- -5'
18782 3' -59.5 NC_004683.1 + 24235 0.75 0.13284
Target:  5'- --gCGgCCUUGugCAGGUCGGCGAUc -3'
miRNA:   3'- ccaGCgGGAACugGUCCGGCCGCUAc -5'
18782 3' -59.5 NC_004683.1 + 12707 0.74 0.168827
Target:  5'- cGG-CGCCgc-GGCCAGGCUGGCGAc- -3'
miRNA:   3'- -CCaGCGGgaaCUGGUCCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 51412 0.71 0.27413
Target:  5'- uGGUCGCCUc-GACCGuuucgcGGCUGGCGuUGa -3'
miRNA:   3'- -CCAGCGGGaaCUGGU------CCGGCCGCuAC- -5'
18782 3' -59.5 NC_004683.1 + 46721 0.69 0.348096
Target:  5'- gGGUCGUCaugGugCGGGUCGGCuGAUc -3'
miRNA:   3'- -CCAGCGGgaaCugGUCCGGCCG-CUAc -5'
18782 3' -59.5 NC_004683.1 + 5173 0.69 0.354594
Target:  5'- -cUCGCCCUUGACCucuucgcgucacGGCCGaaGGUGc -3'
miRNA:   3'- ccAGCGGGAACUGGu-----------CCGGCcgCUAC- -5'
18782 3' -59.5 NC_004683.1 + 21816 0.68 0.390088
Target:  5'- cGGUCuGCCCgcgGGCUGGGuugaauCCGGCGGc- -3'
miRNA:   3'- -CCAG-CGGGaa-CUGGUCC------GGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 8629 0.68 0.390088
Target:  5'- --aCGCCaCggcGAUCAGGCCGGUGcgGu -3'
miRNA:   3'- ccaGCGG-Gaa-CUGGUCCGGCCGCuaC- -5'
18782 3' -59.5 NC_004683.1 + 25638 0.68 0.407788
Target:  5'- cGUUGCCgaccgcGGCCAGGgCGGCGAc- -3'
miRNA:   3'- cCAGCGGgaa---CUGGUCCgGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 8824 0.66 0.533761
Target:  5'- cGUUGCCCUc-ACCGaacGcGCCGGCGAg- -3'
miRNA:   3'- cCAGCGGGAacUGGU---C-CGGCCGCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.