miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18782 3' -59.5 NC_004683.1 + 2125 0.68 0.396226
Target:  5'- -aUCGCCCUggugguggcgggcgUGGCCGuGCUGGCGGg- -3'
miRNA:   3'- ccAGCGGGA--------------ACUGGUcCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 3328 0.67 0.454153
Target:  5'- aGGUCGCCgc-GGCCAGGCCcuCGGa- -3'
miRNA:   3'- -CCAGCGGgaaCUGGUCCGGccGCUac -5'
18782 3' -59.5 NC_004683.1 + 4008 0.66 0.493222
Target:  5'- gGGUCGaCCUcuucagcgaUGcuGCgCAGGCUGGCGAUc -3'
miRNA:   3'- -CCAGCgGGA---------AC--UG-GUCCGGCCGCUAc -5'
18782 3' -59.5 NC_004683.1 + 4209 0.77 0.104042
Target:  5'- aGGUC-CCCgaGAUCGGGCCGGUGAc- -3'
miRNA:   3'- -CCAGcGGGaaCUGGUCCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 5173 0.69 0.354594
Target:  5'- -cUCGCCCUUGACCucuucgcgucacGGCCGaaGGUGc -3'
miRNA:   3'- ccAGCGGGAACUGGu-----------CCGGCcgCUAC- -5'
18782 3' -59.5 NC_004683.1 + 5429 0.66 0.503231
Target:  5'- cGUCGgCCUUGGUCAGGCCcauGGCa--- -3'
miRNA:   3'- cCAGCgGGAACUGGUCCGG---CCGcuac -5'
18782 3' -59.5 NC_004683.1 + 5451 0.7 0.309433
Target:  5'- -uUCGCCC---GCCAGGucgucgccaCCGGCGAUGu -3'
miRNA:   3'- ccAGCGGGaacUGGUCC---------GGCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 5787 0.78 0.085816
Target:  5'- uGGUUGCCCU-GGCCGGuGCCGGUcGUGa -3'
miRNA:   3'- -CCAGCGGGAaCUGGUC-CGGCCGcUAC- -5'
18782 3' -59.5 NC_004683.1 + 5937 0.66 0.482318
Target:  5'- aGGUUGUUCgccaGCCAGGCgccuuggCGGCGGUGc -3'
miRNA:   3'- -CCAGCGGGaac-UGGUCCG-------GCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 5948 0.67 0.473485
Target:  5'- cGGcgaGCCCUcccagcUG-CUGGGCCGGcCGGUGg -3'
miRNA:   3'- -CCag-CGGGA------ACuGGUCCGGCC-GCUAC- -5'
18782 3' -59.5 NC_004683.1 + 8629 0.68 0.390088
Target:  5'- --aCGCCaCggcGAUCAGGCCGGUGcgGu -3'
miRNA:   3'- ccaGCGG-Gaa-CUGGUCCGGCCGCuaC- -5'
18782 3' -59.5 NC_004683.1 + 8824 0.66 0.533761
Target:  5'- cGUUGCCCUc-ACCGaacGcGCCGGCGAg- -3'
miRNA:   3'- cCAGCGGGAacUGGU---C-CGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 9228 0.7 0.302105
Target:  5'- cGGUccCGCCUggGACgCGcuGGCCGGCGAc- -3'
miRNA:   3'- -CCA--GCGGGaaCUG-GU--CCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 12707 0.74 0.168827
Target:  5'- cGG-CGCCgc-GGCCAGGCUGGCGAc- -3'
miRNA:   3'- -CCaGCGGgaaCUGGUCCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 13133 0.66 0.513328
Target:  5'- cGUCGCCUgc-AUguGGCUGGCGuUGa -3'
miRNA:   3'- cCAGCGGGaacUGguCCGGCCGCuAC- -5'
18782 3' -59.5 NC_004683.1 + 17828 1.09 0.000451
Target:  5'- gGGUCGCCCUUGACCAGGCCGGCGAUGc -3'
miRNA:   3'- -CCAGCGGGAACUGGUCCGGCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 18371 0.74 0.160143
Target:  5'- cGGUCuaCCUgaUGGCCgagaAGGUCGGCGGUGc -3'
miRNA:   3'- -CCAGcgGGA--ACUGG----UCCGGCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 18642 0.67 0.454153
Target:  5'- aGGUCGCCCg-GugUcGGCaGGCuGAUGg -3'
miRNA:   3'- -CCAGCGGGaaCugGuCCGgCCG-CUAC- -5'
18782 3' -59.5 NC_004683.1 + 21286 0.68 0.416824
Target:  5'- uGGUCGCCCagcAgCAGGCgGGgGAUc -3'
miRNA:   3'- -CCAGCGGGaacUgGUCCGgCCgCUAc -5'
18782 3' -59.5 NC_004683.1 + 21334 0.67 0.454153
Target:  5'- aGGUCgguGCCaaa---CAGGCCGGCGGUa -3'
miRNA:   3'- -CCAG---CGGgaacugGUCCGGCCGCUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.