miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18782 3' -59.5 NC_004683.1 + 2125 0.68 0.396226
Target:  5'- -aUCGCCCUggugguggcgggcgUGGCCGuGCUGGCGGg- -3'
miRNA:   3'- ccAGCGGGA--------------ACUGGUcCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 21816 0.68 0.390088
Target:  5'- cGGUCuGCCCgcgGGCUGGGuugaauCCGGCGGc- -3'
miRNA:   3'- -CCAG-CGGGaa-CUGGUCC------GGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 8629 0.68 0.390088
Target:  5'- --aCGCCaCggcGAUCAGGCCGGUGcgGu -3'
miRNA:   3'- ccaGCGG-Gaa-CUGGUCCGGCCGCuaC- -5'
18782 3' -59.5 NC_004683.1 + 21958 0.69 0.364499
Target:  5'- cGGcCGCCgaguucaccGGCCAGGCgGGUGGUGc -3'
miRNA:   3'- -CCaGCGGgaa------CUGGUCCGgCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 5173 0.69 0.354594
Target:  5'- -cUCGCCCUUGACCucuucgcgucacGGCCGaaGGUGc -3'
miRNA:   3'- ccAGCGGGAACUGGu-----------CCGGCcgCUAC- -5'
18782 3' -59.5 NC_004683.1 + 46721 0.69 0.348096
Target:  5'- gGGUCGUCaugGugCGGGUCGGCuGAUc -3'
miRNA:   3'- -CCAGCGGgaaCugGUCCGGCCG-CUAc -5'
18782 3' -59.5 NC_004683.1 + 25553 0.69 0.332228
Target:  5'- uGGUCGCCgCccUGGCCGcGGUCGGCa--- -3'
miRNA:   3'- -CCAGCGG-Ga-ACUGGU-CCGGCCGcuac -5'
18782 3' -59.5 NC_004683.1 + 5451 0.7 0.309433
Target:  5'- -uUCGCCC---GCCAGGucgucgccaCCGGCGAUGu -3'
miRNA:   3'- ccAGCGGGaacUGGUCC---------GGCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 9228 0.7 0.302105
Target:  5'- cGGUccCGCCUggGACgCGcuGGCCGGCGAc- -3'
miRNA:   3'- -CCA--GCGGGaaCUG-GU--CCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 51412 0.71 0.27413
Target:  5'- uGGUCGCCUc-GACCGuuucgcGGCUGGCGuUGa -3'
miRNA:   3'- -CCAGCGGGaaCUGGU------CCGGCCGCuAC- -5'
18782 3' -59.5 NC_004683.1 + 52230 0.72 0.2079
Target:  5'- gGGUcCGCCUcggcGAcCCGGGCCGGCGcgGc -3'
miRNA:   3'- -CCA-GCGGGaa--CU-GGUCCGGCCGCuaC- -5'
18782 3' -59.5 NC_004683.1 + 12707 0.74 0.168827
Target:  5'- cGG-CGCCgc-GGCCAGGCUGGCGAc- -3'
miRNA:   3'- -CCaGCGGgaaCUGGUCCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 18371 0.74 0.160143
Target:  5'- cGGUCuaCCUgaUGGCCgagaAGGUCGGCGGUGc -3'
miRNA:   3'- -CCAGcgGGA--ACUGG----UCCGGCCGCUAC- -5'
18782 3' -59.5 NC_004683.1 + 24235 0.75 0.13284
Target:  5'- --gCGgCCUUGugCAGGUCGGCGAUc -3'
miRNA:   3'- ccaGCgGGAACugGUCCGGCCGCUAc -5'
18782 3' -59.5 NC_004683.1 + 4209 0.77 0.104042
Target:  5'- aGGUC-CCCgaGAUCGGGCCGGUGAc- -3'
miRNA:   3'- -CCAGcGGGaaCUGGUCCGGCCGCUac -5'
18782 3' -59.5 NC_004683.1 + 5787 0.78 0.085816
Target:  5'- uGGUUGCCCU-GGCCGGuGCCGGUcGUGa -3'
miRNA:   3'- -CCAGCGGGAaCUGGUC-CGGCCGcUAC- -5'
18782 3' -59.5 NC_004683.1 + 17828 1.09 0.000451
Target:  5'- gGGUCGCCCUUGACCAGGCCGGCGAUGc -3'
miRNA:   3'- -CCAGCGGGAACUGGUCCGGCCGCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.