miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18782 5' -53.6 NC_004683.1 + 51401 0.66 0.808464
Target:  5'- aCCGUUucGCGGC-UGGCGuuGAGGu- -3'
miRNA:   3'- gGGUAGu-CGCCGaACCGCuuCUUCua -5'
18782 5' -53.6 NC_004683.1 + 54053 0.66 0.808464
Target:  5'- cCUCcgCGGUGaGCUUGGCGAcGucGAa -3'
miRNA:   3'- -GGGuaGUCGC-CGAACCGCUuCuuCUa -5'
18782 5' -53.6 NC_004683.1 + 34263 0.66 0.808464
Target:  5'- gCUUGUCGGCuGGCacGGCGAAGccGAa -3'
miRNA:   3'- -GGGUAGUCG-CCGaaCCGCUUCuuCUa -5'
18782 5' -53.6 NC_004683.1 + 12716 0.66 0.794761
Target:  5'- gCCCAgCAGCGGCgccgcggccaggcUGGCGAcGAAu-- -3'
miRNA:   3'- -GGGUaGUCGCCGa------------ACCGCUuCUUcua -5'
18782 5' -53.6 NC_004683.1 + 51062 0.66 0.788782
Target:  5'- aCCCcUCGGCGcCUUGGCGgcGGGu-- -3'
miRNA:   3'- -GGGuAGUCGCcGAACCGCuuCUUcua -5'
18782 5' -53.6 NC_004683.1 + 56084 0.66 0.77868
Target:  5'- --aGUCGGCGGCgguggUGGUGgcGAGGu- -3'
miRNA:   3'- gggUAGUCGCCGa----ACCGCuuCUUCua -5'
18782 5' -53.6 NC_004683.1 + 41394 0.66 0.758016
Target:  5'- gCCGUCAGCcugGGCgggUGGCGcGGuGAGGc -3'
miRNA:   3'- gGGUAGUCG---CCGa--ACCGCuUC-UUCUa -5'
18782 5' -53.6 NC_004683.1 + 32706 0.67 0.736817
Target:  5'- aCCAaCuGCGGCUgGGCGAAGcguacGAGGc -3'
miRNA:   3'- gGGUaGuCGCCGAaCCGCUUC-----UUCUa -5'
18782 5' -53.6 NC_004683.1 + 10061 0.67 0.736817
Target:  5'- gCCG-CGGCGGCgacUGGuCGAuccucaAGAAGAUg -3'
miRNA:   3'- gGGUaGUCGCCGa--ACC-GCU------UCUUCUA- -5'
18782 5' -53.6 NC_004683.1 + 27429 0.67 0.703129
Target:  5'- aUCCAcCAGCGGaaucgacaUUGGCGggGAuaaacccAGAa -3'
miRNA:   3'- -GGGUaGUCGCCg-------AACCGCuuCU-------UCUa -5'
18782 5' -53.6 NC_004683.1 + 33686 0.68 0.670979
Target:  5'- cCCCGUgcgguacuacCAGCGGCUcaaucgccUGGUGGAGAccgAGGc -3'
miRNA:   3'- -GGGUA----------GUCGCCGA--------ACCGCUUCU---UCUa -5'
18782 5' -53.6 NC_004683.1 + 21598 0.71 0.484092
Target:  5'- aCCAUCGGCGcGUggGGUGAGGgcGGc -3'
miRNA:   3'- gGGUAGUCGC-CGaaCCGCUUCuuCUa -5'
18782 5' -53.6 NC_004683.1 + 24578 0.73 0.368055
Target:  5'- cCCCAUCGGCGGCUaccucGGCcucauGGGAGGc -3'
miRNA:   3'- -GGGUAGUCGCCGAa----CCGcu---UCUUCUa -5'
18782 5' -53.6 NC_004683.1 + 17793 1.08 0.001528
Target:  5'- gCCCAUCAGCGGCUUGGCGAAGAAGAUg -3'
miRNA:   3'- -GGGUAGUCGCCGAACCGCUUCUUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.