miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18783 3' -55.3 NC_004683.1 + 10803 0.66 0.744441
Target:  5'- -cCCGCCgcGCCGAUaCCaGACAGUg- -3'
miRNA:   3'- guGGCGGaaCGGCUA-GGgCUGUUAga -5'
18783 3' -55.3 NC_004683.1 + 23792 0.66 0.744441
Target:  5'- cCGCCGCCggUGCCG--CCgCGGCGgaacGUCg -3'
miRNA:   3'- -GUGGCGGa-ACGGCuaGG-GCUGU----UAGa -5'
18783 3' -55.3 NC_004683.1 + 47051 0.66 0.744441
Target:  5'- aCACCaGCgCUacUGCaCGGccaCCCGACGAUCg -3'
miRNA:   3'- -GUGG-CG-GA--ACG-GCUa--GGGCUGUUAGa -5'
18783 3' -55.3 NC_004683.1 + 8602 0.66 0.733962
Target:  5'- gGCCGCCcUGCaguCGGUUgUCGACGGUCg -3'
miRNA:   3'- gUGGCGGaACG---GCUAG-GGCUGUUAGa -5'
18783 3' -55.3 NC_004683.1 + 10554 0.66 0.723382
Target:  5'- uCGCgCGCCUUGUCGuaggcgUCCGACGcccgAUCg -3'
miRNA:   3'- -GUG-GCGGAACGGCua----GGGCUGU----UAGa -5'
18783 3' -55.3 NC_004683.1 + 10043 0.66 0.723382
Target:  5'- aCGCCGCCgaGCCGuucggCCgCGGCGGc-- -3'
miRNA:   3'- -GUGGCGGaaCGGCua---GG-GCUGUUaga -5'
18783 3' -55.3 NC_004683.1 + 18464 0.66 0.712711
Target:  5'- gGCCGCaccGCCGAccuUCUCGGCcAUCa -3'
miRNA:   3'- gUGGCGgaaCGGCU---AGGGCUGuUAGa -5'
18783 3' -55.3 NC_004683.1 + 12242 0.66 0.712711
Target:  5'- gAgCGCCcggcgUGCCGAUgCCCGGCGc--- -3'
miRNA:   3'- gUgGCGGa----ACGGCUA-GGGCUGUuaga -5'
18783 3' -55.3 NC_004683.1 + 21191 0.66 0.711639
Target:  5'- aCGCUGCCaUGUCGAUCCCccgccugcugcugGGCGAc-- -3'
miRNA:   3'- -GUGGCGGaACGGCUAGGG-------------CUGUUaga -5'
18783 3' -55.3 NC_004683.1 + 5783 0.66 0.70196
Target:  5'- uGCCcugGCCggUGCCGGUCgUGAgGGUCa -3'
miRNA:   3'- gUGG---CGGa-ACGGCUAGgGCUgUUAGa -5'
18783 3' -55.3 NC_004683.1 + 46684 0.66 0.691142
Target:  5'- gGCgGCCUUGCCG-UCgCGGCccUCg -3'
miRNA:   3'- gUGgCGGAACGGCuAGgGCUGuuAGa -5'
18783 3' -55.3 NC_004683.1 + 6012 0.66 0.691142
Target:  5'- gGCuCGCCgUUGCCGAUCgUGguccACAGUCc -3'
miRNA:   3'- gUG-GCGG-AACGGCUAGgGC----UGUUAGa -5'
18783 3' -55.3 NC_004683.1 + 21909 0.67 0.680267
Target:  5'- gGCUGCUggugcGUCGGgcaaUCCCGGCAAUCc -3'
miRNA:   3'- gUGGCGGaa---CGGCU----AGGGCUGUUAGa -5'
18783 3' -55.3 NC_004683.1 + 2650 0.67 0.680267
Target:  5'- aCGCCGaCCUgGCCGGUaacucguaCUgGACGAUCg -3'
miRNA:   3'- -GUGGC-GGAaCGGCUA--------GGgCUGUUAGa -5'
18783 3' -55.3 NC_004683.1 + 51596 0.67 0.680267
Target:  5'- gACCGUCgccagGCCGAgCUCGACGcgAUCa -3'
miRNA:   3'- gUGGCGGaa---CGGCUaGGGCUGU--UAGa -5'
18783 3' -55.3 NC_004683.1 + 51588 0.67 0.680267
Target:  5'- -gUCGCCgaUGCCGAUCgCG-CGGUCg -3'
miRNA:   3'- guGGCGGa-ACGGCUAGgGCuGUUAGa -5'
18783 3' -55.3 NC_004683.1 + 15129 0.67 0.680267
Target:  5'- uGCCgGCCUgcaUGCCGAaCCCGAUg---- -3'
miRNA:   3'- gUGG-CGGA---ACGGCUaGGGCUGuuaga -5'
18783 3' -55.3 NC_004683.1 + 6155 0.67 0.680267
Target:  5'- uCGCCGUCaUGCCGAUacggUCGGCGAUg- -3'
miRNA:   3'- -GUGGCGGaACGGCUAg---GGCUGUUAga -5'
18783 3' -55.3 NC_004683.1 + 25649 0.67 0.669347
Target:  5'- gGCCGCCgUGCCGuUgCCGACcg-Cg -3'
miRNA:   3'- gUGGCGGaACGGCuAgGGCUGuuaGa -5'
18783 3' -55.3 NC_004683.1 + 40870 0.67 0.669347
Target:  5'- uCGCCGUCggcgagcgcGUCGGUCgCGGCGGUCa -3'
miRNA:   3'- -GUGGCGGaa-------CGGCUAGgGCUGUUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.