Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18783 | 5' | -58.2 | NC_004683.1 | + | 18286 | 1.09 | 0.000599 |
Target: 5'- uUGAGCCGGGCGACGAUGUCUACGGCGa -3' miRNA: 3'- -ACUCGGCCCGCUGCUACAGAUGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 56046 | 0.75 | 0.169078 |
Target: 5'- cGAGCCgugugguguGGGCGACGAUGcCgAUGGUGg -3' miRNA: 3'- aCUCGG---------CCCGCUGCUACaGaUGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 53240 | 0.74 | 0.203141 |
Target: 5'- gUGAucuGCCGGGUGAgCGGUGUCgGgGGCGc -3' miRNA: 3'- -ACU---CGGCCCGCU-GCUACAGaUgCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 51395 | 0.73 | 0.236933 |
Target: 5'- gUGAGCCaGGGCGACaccgcacGUGUC-GCGGCc -3' miRNA: 3'- -ACUCGG-CCCGCUGc------UACAGaUGCCGc -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 49083 | 0.71 | 0.3185 |
Target: 5'- cGGGCUugaGGGCGGCGGgaUC-GCGGCGg -3' miRNA: 3'- aCUCGG---CCCGCUGCUacAGaUGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 13012 | 0.71 | 0.3185 |
Target: 5'- --uGCCGGGCGcCGGUGgcccCGGCGa -3' miRNA: 3'- acuCGGCCCGCuGCUACagauGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 24547 | 0.7 | 0.333986 |
Target: 5'- gGAuCCGGGCG-CGGUGUagauccagaucUUGCGGCGc -3' miRNA: 3'- aCUcGGCCCGCuGCUACA-----------GAUGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 31311 | 0.7 | 0.341132 |
Target: 5'- cGGGCCGuggcgguGGCGGCGAUGUCgccgugAUGGg- -3' miRNA: 3'- aCUCGGC-------CCGCUGCUACAGa-----UGCCgc -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 13849 | 0.7 | 0.341933 |
Target: 5'- cUGAGCCGGGUucggguucGGCGGggccUGUUgccCGGCGg -3' miRNA: 3'- -ACUCGGCCCG--------CUGCU----ACAGau-GCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 37064 | 0.7 | 0.350016 |
Target: 5'- gGGGCgguuCGGGCGGCGAUGcccaggucaUCgaugcucgGCGGCGu -3' miRNA: 3'- aCUCG----GCCCGCUGCUAC---------AGa-------UGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 408 | 0.7 | 0.375072 |
Target: 5'- aGAGCugCGGGCGGUGAUGgCgcagGCGGUGg -3' miRNA: 3'- aCUCG--GCCCGCUGCUACaGa---UGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 45568 | 0.69 | 0.392437 |
Target: 5'- cGAGCCggucggugcgGGGCGcgucgcgcGCGAgaaGUgCUGCGGCGg -3' miRNA: 3'- aCUCGG----------CCCGC--------UGCUa--CA-GAUGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 47017 | 0.69 | 0.410316 |
Target: 5'- cGAGCCGGcGCGcACGAUG---AUGGCc -3' miRNA: 3'- aCUCGGCC-CGC-UGCUACagaUGCCGc -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 15559 | 0.69 | 0.410316 |
Target: 5'- uUGAGCCGuacuacgucaaGGUGGCGA--UCgACGGCGg -3' miRNA: 3'- -ACUCGGC-----------CCGCUGCUacAGaUGCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 16877 | 0.69 | 0.419444 |
Target: 5'- cGAGCCGGGCGAggacucgccgcUGGUGUCgu--GCa -3' miRNA: 3'- aCUCGGCCCGCU-----------GCUACAGaugcCGc -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 26545 | 0.68 | 0.438062 |
Target: 5'- cGGGCucggCGGGCGgccuggaucGCGGUGUgcaCUGCGGCc -3' miRNA: 3'- aCUCG----GCCCGC---------UGCUACA---GAUGCCGc -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 41019 | 0.68 | 0.447547 |
Target: 5'- cGGGCaacGGCGGCGcgGUCagcuCGGCGc -3' miRNA: 3'- aCUCGgc-CCGCUGCuaCAGau--GCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 24291 | 0.68 | 0.447547 |
Target: 5'- aUGGGCCcGGuCGACGGcuaCUACGGCa -3' miRNA: 3'- -ACUCGGcCC-GCUGCUacaGAUGCCGc -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 36109 | 0.68 | 0.457145 |
Target: 5'- aUGAgGUCGGGCGAUcucGUCgauCGGCGa -3' miRNA: 3'- -ACU-CGGCCCGCUGcuaCAGau-GCCGC- -5' |
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18783 | 5' | -58.2 | NC_004683.1 | + | 5921 | 0.68 | 0.466852 |
Target: 5'- aGGcGCCuuGGCGGCGGUGcCgcGCGGCGa -3' miRNA: 3'- aCU-CGGc-CCGCUGCUACaGa-UGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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