miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18784 3' -61.9 NC_004683.1 + 6956 0.67 0.339451
Target:  5'- gCCGUCGCGcGCCgucCAgCGGCcguaggGCUugGu -3'
miRNA:   3'- -GGCAGCGC-CGGa--GUgGCCGa-----CGGugU- -5'
18784 3' -61.9 NC_004683.1 + 30143 0.67 0.339451
Target:  5'- gCGUC-CGGCuccauCUCAuUCGGCUGCCAa- -3'
miRNA:   3'- gGCAGcGCCG-----GAGU-GGCCGACGGUgu -5'
18784 3' -61.9 NC_004683.1 + 15944 0.68 0.309334
Target:  5'- ----aGCGGCCUCAgCGGCcugGCCGa- -3'
miRNA:   3'- ggcagCGCCGGAGUgGCCGa--CGGUgu -5'
18784 3' -61.9 NC_004683.1 + 40192 0.69 0.26162
Target:  5'- -gGUCGCGGCCgCGuCCGGCUgGUCuguCAa -3'
miRNA:   3'- ggCAGCGCCGGaGU-GGCCGA-CGGu--GU- -5'
18784 3' -61.9 NC_004683.1 + 43047 0.66 0.380004
Target:  5'- cCUGuUUGCGaGCCUCAgccUCGGCcuugcGCCACAu -3'
miRNA:   3'- -GGC-AGCGC-CGGAGU---GGCCGa----CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 25634 0.67 0.3634
Target:  5'- gCCGacCGCGGCCagGgCGGCgaccaggccgaGCCACAg -3'
miRNA:   3'- -GGCa-GCGCCGGagUgGCCGa----------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 42743 0.67 0.331726
Target:  5'- uCCGUCcuguGUGGgcacaCUCAUCGGCgGCCGCc -3'
miRNA:   3'- -GGCAG----CGCCg----GAGUGGCCGaCGGUGu -5'
18784 3' -61.9 NC_004683.1 + 24786 0.69 0.255315
Target:  5'- gCGUUGCGGUCgCGgCGGCgcgcgGCCAUg -3'
miRNA:   3'- gGCAGCGCCGGaGUgGCCGa----CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 1374 0.67 0.355288
Target:  5'- uCCGUCGacCGGCCU-GCgGGUUGgCCAUg -3'
miRNA:   3'- -GGCAGC--GCCGGAgUGgCCGAC-GGUGu -5'
18784 3' -61.9 NC_004683.1 + 49419 0.69 0.255315
Target:  5'- gCCGUCGUGGU---GCgGGCaGCCGCAc -3'
miRNA:   3'- -GGCAGCGCCGgagUGgCCGaCGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 13636 0.67 0.331726
Target:  5'- gCCGaucugUGCGGCCUgagaugCACCGGggGCCAa- -3'
miRNA:   3'- -GGCa----GCGCCGGA------GUGGCCgaCGGUgu -5'
18784 3' -61.9 NC_004683.1 + 51401 0.67 0.339451
Target:  5'- aCCGuuUCGCGGCUggcguugagguUCAUCGGCgGCCc-- -3'
miRNA:   3'- -GGC--AGCGCCGG-----------AGUGGCCGaCGGugu -5'
18784 3' -61.9 NC_004683.1 + 53665 0.68 0.324132
Target:  5'- ---aCGCGGCCggcggugCgGCCGGCgucUGCCGCGg -3'
miRNA:   3'- ggcaGCGCCGGa------G-UGGCCG---ACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 5071 0.68 0.316668
Target:  5'- gCGUCGCGGUCguagUCGCCacGGCcGCCcuGCGa -3'
miRNA:   3'- gGCAGCGCCGG----AGUGG--CCGaCGG--UGU- -5'
18784 3' -61.9 NC_004683.1 + 51799 0.68 0.29787
Target:  5'- -gGUCGCGGCCguagCacuccugcagggccuGCuCGGCUGCCuCGa -3'
miRNA:   3'- ggCAGCGCCGGa---G---------------UG-GCCGACGGuGU- -5'
18784 3' -61.9 NC_004683.1 + 8106 0.69 0.27461
Target:  5'- cUCGacCGCGGUgcgcaUCACCGGCUGCauccaGCAg -3'
miRNA:   3'- -GGCa-GCGCCGg----AGUGGCCGACGg----UGU- -5'
18784 3' -61.9 NC_004683.1 + 22061 0.66 0.412031
Target:  5'- gCCG-CGCGcgccagcaccacccGCCUgGCCGGUgaacucggcgGCCGCAc -3'
miRNA:   3'- -GGCaGCGC--------------CGGAgUGGCCGa---------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 7431 0.66 0.388495
Target:  5'- gCCGUCGUaGaccaaCUCACCguccggcuuGGCUGCCAgCAc -3'
miRNA:   3'- -GGCAGCGcCg----GAGUGG---------CCGACGGU-GU- -5'
18784 3' -61.9 NC_004683.1 + 6057 0.67 0.371639
Target:  5'- uCCaUCGCcucGGCCUCacccACCGGCcgGCCcaGCAg -3'
miRNA:   3'- -GGcAGCG---CCGGAG----UGGCCGa-CGG--UGU- -5'
18784 3' -61.9 NC_004683.1 + 25977 0.67 0.36668
Target:  5'- aCCGagGCGGCCagcgUCugcCCGGCgaacucgacgccgaGCCGCAg -3'
miRNA:   3'- -GGCagCGCCGG----AGu--GGCCGa-------------CGGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.