miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18784 3' -61.9 NC_004683.1 + 41285 0.66 0.379162
Target:  5'- gCCGcCGCcauucugcuacccGGCCUCACCG-C-GCCACc -3'
miRNA:   3'- -GGCaGCG-------------CCGGAGUGGCcGaCGGUGu -5'
18784 3' -61.9 NC_004683.1 + 24357 0.66 0.378321
Target:  5'- cUCGUCGCcgcaGGCCacgcggucgcgaUCACCGGUgucuucgacgagGCCACc -3'
miRNA:   3'- -GGCAGCG----CCGG------------AGUGGCCGa-----------CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 39939 0.67 0.374969
Target:  5'- -aGUUGCGGUgggugcagguuggcgCUCGCCGGCUGgugacUCGCGu -3'
miRNA:   3'- ggCAGCGCCG---------------GAGUGGCCGAC-----GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 24888 0.67 0.371639
Target:  5'- aCCGgcaUCGCccgcaagacccGGCCgCugUGGCUGCUGCGg -3'
miRNA:   3'- -GGC---AGCG-----------CCGGaGugGCCGACGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 54933 0.67 0.371639
Target:  5'- aCgGUCGCcacuucGCuCUCACCGGCgcccgcgGCUGCAu -3'
miRNA:   3'- -GgCAGCGc-----CG-GAGUGGCCGa------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 6057 0.67 0.371639
Target:  5'- uCCaUCGCcucGGCCUCacccACCGGCcgGCCcaGCAg -3'
miRNA:   3'- -GGcAGCG---CCGGAG----UGGCCGa-CGG--UGU- -5'
18784 3' -61.9 NC_004683.1 + 10128 0.67 0.371639
Target:  5'- gCCGcCGCGGCCgaa-CGGCUcgGCgGCGu -3'
miRNA:   3'- -GGCaGCGCCGGagugGCCGA--CGgUGU- -5'
18784 3' -61.9 NC_004683.1 + 42590 0.67 0.370809
Target:  5'- gCgGUCGgGGCCggUCGuCCGGCUGggguggucggcgaCCGCGa -3'
miRNA:   3'- -GgCAGCgCCGG--AGU-GGCCGAC-------------GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 4476 0.67 0.369981
Target:  5'- -aGUCuCGGCCUCAUCGGCgugggacucgucGUCGCu -3'
miRNA:   3'- ggCAGcGCCGGAGUGGCCGa-----------CGGUGu -5'
18784 3' -61.9 NC_004683.1 + 25977 0.67 0.36668
Target:  5'- aCCGagGCGGCCagcgUCugcCCGGCgaacucgacgccgaGCCGCAg -3'
miRNA:   3'- -GGCagCGCCGG----AGu--GGCCGa-------------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 25634 0.67 0.3634
Target:  5'- gCCGacCGCGGCCagGgCGGCgaccaggccgaGCCACAg -3'
miRNA:   3'- -GGCa-GCGCCGGagUgGCCGa----------CGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 12625 0.67 0.3634
Target:  5'- uUCGUCGCcaGCCUgGCCgcGGC-GCCGCu -3'
miRNA:   3'- -GGCAGCGc-CGGAgUGG--CCGaCGGUGu -5'
18784 3' -61.9 NC_004683.1 + 26149 0.67 0.362583
Target:  5'- gCCGgCGCGGCggucucgcugaucCUCgcgaucaugaACCGGC-GCCACAc -3'
miRNA:   3'- -GGCaGCGCCG-------------GAG----------UGGCCGaCGGUGU- -5'
18784 3' -61.9 NC_004683.1 + 1374 0.67 0.355288
Target:  5'- uCCGUCGacCGGCCU-GCgGGUUGgCCAUg -3'
miRNA:   3'- -GGCAGC--GCCGGAgUGgCCGAC-GGUGu -5'
18784 3' -61.9 NC_004683.1 + 34350 0.67 0.355288
Target:  5'- gCCGUU-CGGCUUCGCCGuGCcaGCCgACAa -3'
miRNA:   3'- -GGCAGcGCCGGAGUGGC-CGa-CGG-UGU- -5'
18784 3' -61.9 NC_004683.1 + 49283 0.67 0.346513
Target:  5'- aCGUCGCGGCacacguggaggaaCUgACCcguGGCUGaCCGCc -3'
miRNA:   3'- gGCAGCGCCG-------------GAgUGG---CCGAC-GGUGu -5'
18784 3' -61.9 NC_004683.1 + 18115 0.67 0.339451
Target:  5'- aCGaUCGCGGUCgcCGCCGGCaccuaCCGCAc -3'
miRNA:   3'- gGC-AGCGCCGGa-GUGGCCGac---GGUGU- -5'
18784 3' -61.9 NC_004683.1 + 51401 0.67 0.339451
Target:  5'- aCCGuuUCGCGGCUggcguugagguUCAUCGGCgGCCc-- -3'
miRNA:   3'- -GGC--AGCGCCGG-----------AGUGGCCGaCGGugu -5'
18784 3' -61.9 NC_004683.1 + 30143 0.67 0.339451
Target:  5'- gCGUC-CGGCuccauCUCAuUCGGCUGCCAa- -3'
miRNA:   3'- gGCAGcGCCG-----GAGU-GGCCGACGGUgu -5'
18784 3' -61.9 NC_004683.1 + 6956 0.67 0.339451
Target:  5'- gCCGUCGCGcGCCgucCAgCGGCcguaggGCUugGu -3'
miRNA:   3'- -GGCAGCGC-CGGa--GUgGCCGa-----CGGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.