miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18784 5' -56.8 NC_004683.1 + 14679 0.66 0.64384
Target:  5'- aGUCGUCGGggucaucuuuccaGCgGGccUGCGaCCCGUCg -3'
miRNA:   3'- -CAGUAGCCaa-----------CGgCU--ACGC-GGGCAGa -5'
18784 5' -56.8 NC_004683.1 + 28431 0.66 0.617692
Target:  5'- gGUCAUCGa-UGCCGAgcugcggGCGCUCGcggUCUa -3'
miRNA:   3'- -CAGUAGCcaACGGCUa------CGCGGGC---AGA- -5'
18784 5' -56.8 NC_004683.1 + 49341 0.67 0.589449
Target:  5'- cGUCGUCGGgcagcguccacaaGCCGAggGCGCCCc--- -3'
miRNA:   3'- -CAGUAGCCaa-----------CGGCUa-CGCGGGcaga -5'
18784 5' -56.8 NC_004683.1 + 47138 0.67 0.58404
Target:  5'- aUCGUCGGgugGCCGugcaguagcgcugGUGUcgGCCCGUUg -3'
miRNA:   3'- cAGUAGCCaa-CGGC-------------UACG--CGGGCAGa -5'
18784 5' -56.8 NC_004683.1 + 31893 0.67 0.58188
Target:  5'- aUCGUCGGcucggGCCGGUGCagccagcggggcgaGCUgGUCUg -3'
miRNA:   3'- cAGUAGCCaa---CGGCUACG--------------CGGgCAGA- -5'
18784 5' -56.8 NC_004683.1 + 11786 0.67 0.57433
Target:  5'- -cCGUCGGcgUGCCGcUGCagcgcuCCCGUCg -3'
miRNA:   3'- caGUAGCCa-ACGGCuACGc-----GGGCAGa -5'
18784 5' -56.8 NC_004683.1 + 44532 0.67 0.573254
Target:  5'- -aCGUCGGgcGCCGGcgcgguggcgcgcUGCGCgCGUUg -3'
miRNA:   3'- caGUAGCCaaCGGCU-------------ACGCGgGCAGa -5'
18784 5' -56.8 NC_004683.1 + 8860 0.67 0.563586
Target:  5'- gGUCGUCGG-UGUCGAUGCucgGCCgCGa-- -3'
miRNA:   3'- -CAGUAGCCaACGGCUACG---CGG-GCaga -5'
18784 5' -56.8 NC_004683.1 + 13214 0.68 0.528552
Target:  5'- gGUCAUCGGcaccggucccGCCGAUGCcccuccgggcagccGCCgCGUCa -3'
miRNA:   3'- -CAGUAGCCaa--------CGGCUACG--------------CGG-GCAGa -5'
18784 5' -56.8 NC_004683.1 + 44737 0.69 0.479146
Target:  5'- cGUCGU-GGUUcGCCGGggcgcucaugcguUGgGCCCGUCg -3'
miRNA:   3'- -CAGUAgCCAA-CGGCU-------------ACgCGGGCAGa -5'
18784 5' -56.8 NC_004683.1 + 41874 0.69 0.450415
Target:  5'- cGUCAcUGGcagGCCGAgggGCGCCCGa-- -3'
miRNA:   3'- -CAGUaGCCaa-CGGCUa--CGCGGGCaga -5'
18784 5' -56.8 NC_004683.1 + 46612 0.69 0.440729
Target:  5'- -gCGaCGGcaagGCCGccGCGCCCGUCg -3'
miRNA:   3'- caGUaGCCaa--CGGCuaCGCGGGCAGa -5'
18784 5' -56.8 NC_004683.1 + 26135 0.7 0.421717
Target:  5'- uGUCAUCGGguaucGCCGgcGCGgCgGUCUc -3'
miRNA:   3'- -CAGUAGCCaa---CGGCuaCGCgGgCAGA- -5'
18784 5' -56.8 NC_004683.1 + 18396 1.07 0.001088
Target:  5'- uGUCAUCGGUUGCCGAUGCGCCCGUCUc -3'
miRNA:   3'- -CAGUAGCCAACGGCUACGCGGGCAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.