Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18785 | 5' | -58.8 | NC_004683.1 | + | 21456 | 0.68 | 0.474635 |
Target: 5'- cGAcaucAGCGCCGCauGCCca-GUCGCCGGu -3' miRNA: 3'- aCU----UUGCGGCG--UGGcucCAGCGGCCc -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 41124 | 0.68 | 0.474635 |
Target: 5'- cUGAucagcuCGCCggcgagguagGCGCCGAGGUCacuGCCcuGGGg -3' miRNA: 3'- -ACUuu----GCGG----------CGUGGCUCCAG---CGG--CCC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 37845 | 0.68 | 0.464944 |
Target: 5'- gUGAcGCgGCCGC-CUGGGuGUCGUCGGc -3' miRNA: 3'- -ACUuUG-CGGCGuGGCUC-CAGCGGCCc -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 33101 | 0.68 | 0.455357 |
Target: 5'- cGGGAgGCCGCccucgcgcaguGCCGucacaAGGUCGUCGaGGu -3' miRNA: 3'- aCUUUgCGGCG-----------UGGC-----UCCAGCGGC-CC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 14913 | 0.68 | 0.445878 |
Target: 5'- gGAGACGUU-CACCcuGGUCGCgGGGu -3' miRNA: 3'- aCUUUGCGGcGUGGcuCCAGCGgCCC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 42577 | 0.68 | 0.445878 |
Target: 5'- cGAGcGCGCCGCGgCGGucggggccGGUCGuCCGGc -3' miRNA: 3'- aCUU-UGCGGCGUgGCU--------CCAGC-GGCCc -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 40484 | 0.68 | 0.445878 |
Target: 5'- gUGGAGCGCgGCAggUCGAGcUCGUCGaGGu -3' miRNA: 3'- -ACUUUGCGgCGU--GGCUCcAGCGGC-CC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 6482 | 0.68 | 0.427256 |
Target: 5'- cGAgGACGCCaGCGCCGA----GCCGGGu -3' miRNA: 3'- aCU-UUGCGG-CGUGGCUccagCGGCCC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 52786 | 0.68 | 0.427256 |
Target: 5'- aGAGGCGCUGCucGCCGAGGcCGaCGa- -3' miRNA: 3'- aCUUUGCGGCG--UGGCUCCaGCgGCcc -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 15215 | 0.69 | 0.417213 |
Target: 5'- gGGAACguucaaguucgcuGCCGCGCCcGGGUCGaCGGa -3' miRNA: 3'- aCUUUG-------------CGGCGUGGcUCCAGCgGCCc -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 26301 | 0.69 | 0.391439 |
Target: 5'- cGAGAC-UCGCACCGAGGcauacaaggaaaUCGaCCGGc -3' miRNA: 3'- aCUUUGcGGCGUGGCUCC------------AGC-GGCCc -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 23899 | 0.69 | 0.391439 |
Target: 5'- cGAguuccAGCGCCGCguaggcguggcgGCCGAcGGcaUCGUCGGGc -3' miRNA: 3'- aCU-----UUGCGGCG------------UGGCU-CC--AGCGGCCC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 26079 | 0.69 | 0.37428 |
Target: 5'- aGGAACGCgGcCAgCGAGaUCGCCGcGGu -3' miRNA: 3'- aCUUUGCGgC-GUgGCUCcAGCGGC-CC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 40289 | 0.7 | 0.365894 |
Target: 5'- cGAAcugcGCGCUGgcauCGCCGAGGgcaUCGCCGcGGc -3' miRNA: 3'- aCUU----UGCGGC----GUGGCUCC---AGCGGC-CC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 18165 | 0.7 | 0.365062 |
Target: 5'- cGAAGcCGCCGUcacggucACCGGcucGUCGCCGGa -3' miRNA: 3'- aCUUU-GCGGCG-------UGGCUc--CAGCGGCCc -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 1443 | 0.7 | 0.357638 |
Target: 5'- cGAGGCGCuCGCgGCCGAacUCGgCGGGa -3' miRNA: 3'- aCUUUGCG-GCG-UGGCUccAGCgGCCC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 25520 | 0.7 | 0.352747 |
Target: 5'- uUGAagcuGACGCCGUGCCGcuguggcucggccuGGUCGCCGc- -3' miRNA: 3'- -ACU----UUGCGGCGUGGCu-------------CCAGCGGCcc -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 13166 | 0.7 | 0.349513 |
Target: 5'- ---uACGUCGCAcuacuaucgccCCGcGGUUGCCGGGc -3' miRNA: 3'- acuuUGCGGCGU-----------GGCuCCAGCGGCCC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 1997 | 0.7 | 0.349513 |
Target: 5'- gGAGACuGCCGCACCGGcuGUCGaggugUGGGa -3' miRNA: 3'- aCUUUG-CGGCGUGGCUc-CAGCg----GCCC- -5' |
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18785 | 5' | -58.8 | NC_004683.1 | + | 6470 | 0.7 | 0.341521 |
Target: 5'- cGGuguCGCUGuCGUCGAacaGGUCGCCGGGg -3' miRNA: 3'- aCUuu-GCGGC-GUGGCU---CCAGCGGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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