miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18786 5' -55.8 NC_004683.1 + 49487 0.66 0.692155
Target:  5'- ---aGCccGGU-GCGCCGcUGCCUGGCg -3'
miRNA:   3'- gcaaCGa-CUAgCGCGGCuAUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 7154 0.66 0.692155
Target:  5'- gCGUUGgUGggCGuCGCUGAgacgggugcGCCCGGg -3'
miRNA:   3'- -GCAACgACuaGC-GCGGCUa--------UGGGCCg -5'
18786 5' -55.8 NC_004683.1 + 11040 0.67 0.681423
Target:  5'- gCGUUGCcgaaccgguucaUGGUCGCGCCaucGAgGCCCauucGCg -3'
miRNA:   3'- -GCAACG------------ACUAGCGCGG---CUaUGGGc---CG- -5'
18786 5' -55.8 NC_004683.1 + 54979 0.67 0.681423
Target:  5'- -cUUGgUGAcgUCGUugaGCCGAUGCCCguuGGCc -3'
miRNA:   3'- gcAACgACU--AGCG---CGGCUAUGGG---CCG- -5'
18786 5' -55.8 NC_004683.1 + 56886 0.67 0.670645
Target:  5'- cCGUgGCUcGGUUGCaacGCUGGUGCUCGGg -3'
miRNA:   3'- -GCAaCGA-CUAGCG---CGGCUAUGGGCCg -5'
18786 5' -55.8 NC_004683.1 + 51985 0.67 0.659832
Target:  5'- aCGUaggUGCUGAUCGUGg-GGU-UCCGGCg -3'
miRNA:   3'- -GCA---ACGACUAGCGCggCUAuGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 39540 0.67 0.659832
Target:  5'- ----cCUGuAUCGCGuCCGGguuaccaguUACCCGGCu -3'
miRNA:   3'- gcaacGAC-UAGCGC-GGCU---------AUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 6665 0.67 0.659832
Target:  5'- cCG-UGCUGGccgcggCGCGCCGcugguGUGgCUGGCa -3'
miRNA:   3'- -GCaACGACUa-----GCGCGGC-----UAUgGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 44976 0.67 0.659832
Target:  5'- --cUGCUGugaGCGCCGAguuucucgACCUGGa -3'
miRNA:   3'- gcaACGACuagCGCGGCUa-------UGGGCCg -5'
18786 5' -55.8 NC_004683.1 + 25524 0.67 0.659832
Target:  5'- ---aGCUGAcgcCGUGCCGcugugGCUCGGCc -3'
miRNA:   3'- gcaaCGACUa--GCGCGGCua---UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 14215 0.67 0.648994
Target:  5'- --cUGCUGGUgCGUgGCCGcgACCCGcaGCa -3'
miRNA:   3'- gcaACGACUA-GCG-CGGCuaUGGGC--CG- -5'
18786 5' -55.8 NC_004683.1 + 36667 0.67 0.648994
Target:  5'- aCGggacgGUUGGUCGCuCgGGUGCCCuGGUg -3'
miRNA:   3'- -GCaa---CGACUAGCGcGgCUAUGGG-CCG- -5'
18786 5' -55.8 NC_004683.1 + 31148 0.67 0.638141
Target:  5'- aCGUUGCaccUGAcgUCGCcaGCUGAcAUCUGGCa -3'
miRNA:   3'- -GCAACG---ACU--AGCG--CGGCUaUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 21128 0.67 0.627283
Target:  5'- --gUGCUGAUgcCGCGCUGcUGgucccgaacauCCCGGCc -3'
miRNA:   3'- gcaACGACUA--GCGCGGCuAU-----------GGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 26561 0.67 0.627283
Target:  5'- ---gGCUGGUUGCGCC---GCCCuGCu -3'
miRNA:   3'- gcaaCGACUAGCGCGGcuaUGGGcCG- -5'
18786 5' -55.8 NC_004683.1 + 45588 0.68 0.605588
Target:  5'- uCGUUGacggcCUGGUCGaCGCCGGgguggUGCCCGa- -3'
miRNA:   3'- -GCAAC-----GACUAGC-GCGGCU-----AUGGGCcg -5'
18786 5' -55.8 NC_004683.1 + 6536 0.68 0.605587
Target:  5'- ---cGCUGG-CGCGaCGAcGCUCGGCa -3'
miRNA:   3'- gcaaCGACUaGCGCgGCUaUGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 21360 0.68 0.605587
Target:  5'- gCGUUGCgaGGUCaGCaCCGAUACCgaGGUc -3'
miRNA:   3'- -GCAACGa-CUAG-CGcGGCUAUGGg-CCG- -5'
18786 5' -55.8 NC_004683.1 + 25369 0.68 0.605587
Target:  5'- ---cGCUG--UGCGCCugcagGCCCGGCa -3'
miRNA:   3'- gcaaCGACuaGCGCGGcua--UGGGCCG- -5'
18786 5' -55.8 NC_004683.1 + 25464 0.68 0.605587
Target:  5'- uGUgGCgaugGAUCaGCGCCGGaAUgCGGCg -3'
miRNA:   3'- gCAaCGa---CUAG-CGCGGCUaUGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.