miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18787 5' -55.7 NC_004683.1 + 8024 0.66 0.709153
Target:  5'- aGCCGGUGaugcgcaccGCGGUCgagcGCGAcaucgaugccgAGCugccguucugugaggUGACCCg -3'
miRNA:   3'- -CGGCCAC---------CGCCAG----UGCU-----------UUG---------------ACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 48715 0.66 0.704927
Target:  5'- gGCCGccGUGcauUGGUCGCGGAguccGCgGGCCCa -3'
miRNA:   3'- -CGGC--CACc--GCCAGUGCUU----UGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 42383 0.66 0.704927
Target:  5'- gGCCGGaaucgccacGGCGG-CAgccaccuugggcUGGAGCUGGCUCa -3'
miRNA:   3'- -CGGCCa--------CCGCCaGU------------GCUUUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 20496 0.66 0.704927
Target:  5'- gGCCGGUGGUGGagGCcGGGCgGGuaaCCa -3'
miRNA:   3'- -CGGCCACCGCCagUGcUUUGaCUg--GG- -5'
18787 5' -55.7 NC_004683.1 + 5248 0.67 0.694316
Target:  5'- cUUGGUGGCGGcggcgcgCACGuugucGCUGGCgCCc -3'
miRNA:   3'- cGGCCACCGCCa------GUGCuu---UGACUG-GG- -5'
18787 5' -55.7 NC_004683.1 + 6562 0.67 0.694316
Target:  5'- cGCCGGccgagaacGGCGaUgGCGGAACUGaaGCCUg -3'
miRNA:   3'- -CGGCCa-------CCGCcAgUGCUUUGAC--UGGG- -5'
18787 5' -55.7 NC_004683.1 + 39056 0.67 0.683647
Target:  5'- cCCGGcgGGCGacuguggaGUCACGAAGCaGcauCCCa -3'
miRNA:   3'- cGGCCa-CCGC--------CAGUGCUUUGaCu--GGG- -5'
18787 5' -55.7 NC_004683.1 + 3508 0.67 0.682578
Target:  5'- aUCGGUGGUGGcCGCGGugaacucGGgUGAUCUg -3'
miRNA:   3'- cGGCCACCGCCaGUGCU-------UUgACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 56687 0.67 0.672931
Target:  5'- cGCUGuGcUGGCGGUgCAuCGAgaacgGACUGAgCCCc -3'
miRNA:   3'- -CGGC-C-ACCGCCA-GU-GCU-----UUGACU-GGG- -5'
18787 5' -55.7 NC_004683.1 + 12231 0.67 0.672931
Target:  5'- cGCCGG-GGCGGgagCGCccGGC-GugCCg -3'
miRNA:   3'- -CGGCCaCCGCCa--GUGcuUUGaCugGG- -5'
18787 5' -55.7 NC_004683.1 + 23148 0.67 0.666483
Target:  5'- cGCCGGUGaGCaccaGGcCGCcgagcaggcgacaccGAGACcGACCCa -3'
miRNA:   3'- -CGGCCAC-CG----CCaGUG---------------CUUUGaCUGGG- -5'
18787 5' -55.7 NC_004683.1 + 24565 0.67 0.661101
Target:  5'- aGCCGGUcggcuaccccaucGGCGGcuaccucggccUCAUGGGAggcGACCCg -3'
miRNA:   3'- -CGGCCA-------------CCGCC-----------AGUGCUUUga-CUGGG- -5'
18787 5' -55.7 NC_004683.1 + 32701 0.67 0.651397
Target:  5'- gGCa-GUGGCaGcUCGCGccGGCUGGCCCg -3'
miRNA:   3'- -CGgcCACCGcC-AGUGCu-UUGACUGGG- -5'
18787 5' -55.7 NC_004683.1 + 56078 0.67 0.651397
Target:  5'- cGgCGGUGGUGGUgGCGAggUguuCUCu -3'
miRNA:   3'- -CgGCCACCGCCAgUGCUuuGacuGGG- -5'
18787 5' -55.7 NC_004683.1 + 7336 0.68 0.6406
Target:  5'- gGCCGucGGgGGUCuCGAucgAGCUGGCCg -3'
miRNA:   3'- -CGGCcaCCgCCAGuGCU---UUGACUGGg -5'
18787 5' -55.7 NC_004683.1 + 14216 0.68 0.637359
Target:  5'- uGCUGGUGcGUGGcCGCGAcccgcagcacugccGcaaGCUGugCCg -3'
miRNA:   3'- -CGGCCAC-CGCCaGUGCU--------------U---UGACugGG- -5'
18787 5' -55.7 NC_004683.1 + 7674 0.68 0.618992
Target:  5'- cGCCGcGUcgugGGCGGUgAUGAAGaaGGCCa -3'
miRNA:   3'- -CGGC-CA----CCGCCAgUGCUUUgaCUGGg -5'
18787 5' -55.7 NC_004683.1 + 5777 0.68 0.6082
Target:  5'- gGCCGGUGcCGGUCGUGAGGgUcacGGCCUc -3'
miRNA:   3'- -CGGCCACcGCCAGUGCUUUgA---CUGGG- -5'
18787 5' -55.7 NC_004683.1 + 18143 0.68 0.597429
Target:  5'- cGCCGG-GGCGucGUUAgGgAGGCUG-CCCa -3'
miRNA:   3'- -CGGCCaCCGC--CAGUgC-UUUGACuGGG- -5'
18787 5' -55.7 NC_004683.1 + 29313 0.68 0.597429
Target:  5'- cGCCGGcgcacuucucGGCGuuuGUCGCGAGuuuCUGugCCc -3'
miRNA:   3'- -CGGCCa---------CCGC---CAGUGCUUu--GACugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.