miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18788 3' -61.3 NC_004683.1 + 55044 0.66 0.464489
Target:  5'- cGGUGUGcguagaucaugcagCCGCgGGCGCCGgUGagagCGa -3'
miRNA:   3'- -UCACACa-------------GGCGgCCGCGGCgACa---GCc -5'
18788 3' -61.3 NC_004683.1 + 23491 0.66 0.432763
Target:  5'- uGGUGggaGUCCagccgcccucGUCGGUGCCGCcG-CGGg -3'
miRNA:   3'- -UCACa--CAGG----------CGGCCGCGGCGaCaGCC- -5'
18788 3' -61.3 NC_004683.1 + 12637 0.66 0.4147
Target:  5'- -cUGg--CCG-CGGCGCCGCUGcUGGg -3'
miRNA:   3'- ucACacaGGCgGCCGCGGCGACaGCC- -5'
18788 3' -61.3 NC_004683.1 + 25096 0.67 0.405844
Target:  5'- cAGUGgcgGUCUGgccaacCCGGCGgCGUUGcCGGu -3'
miRNA:   3'- -UCACa--CAGGC------GGCCGCgGCGACaGCC- -5'
18788 3' -61.3 NC_004683.1 + 45708 0.67 0.380004
Target:  5'- gGGUGUGgauaCGUgcuCGGUGUCGUcGUCGGg -3'
miRNA:   3'- -UCACACag--GCG---GCCGCGGCGaCAGCC- -5'
18788 3' -61.3 NC_004683.1 + 20616 0.67 0.371639
Target:  5'- cGU-UG-CCGCCGGUGCCGCcggugaucgUGcCGGa -3'
miRNA:   3'- uCAcACaGGCGGCCGCGGCG---------ACaGCC- -5'
18788 3' -61.3 NC_004683.1 + 40601 0.67 0.3634
Target:  5'- gAGUG-GcCCGCCgaggggGGCGCCGUg--CGGg -3'
miRNA:   3'- -UCACaCaGGCGG------CCGCGGCGacaGCC- -5'
18788 3' -61.3 NC_004683.1 + 38041 0.67 0.3634
Target:  5'- ---aUGUCCGCUugugcacgGGCGCCGCgUGccgcUCGGa -3'
miRNA:   3'- ucacACAGGCGG--------CCGCGGCG-AC----AGCC- -5'
18788 3' -61.3 NC_004683.1 + 48531 0.68 0.355288
Target:  5'- --aGUGUCCucGCCGGCaCCGUcacaaacGUCGGg -3'
miRNA:   3'- ucaCACAGG--CGGCCGcGGCGa------CAGCC- -5'
18788 3' -61.3 NC_004683.1 + 381 0.68 0.339451
Target:  5'- cGGUGcGg--GCCuGGCGUCGCUGUCGa -3'
miRNA:   3'- -UCACaCaggCGG-CCGCGGCGACAGCc -5'
18788 3' -61.3 NC_004683.1 + 7064 0.68 0.339451
Target:  5'- --gGUGUCCGUCGaCGCCGaaCUGUCa- -3'
miRNA:   3'- ucaCACAGGCGGCcGCGGC--GACAGcc -5'
18788 3' -61.3 NC_004683.1 + 22808 0.68 0.331726
Target:  5'- aGGUaGUGUCCGCugauaCGGUGCCGaCgcgcGUCGa -3'
miRNA:   3'- -UCA-CACAGGCG-----GCCGCGGC-Ga---CAGCc -5'
18788 3' -61.3 NC_004683.1 + 13363 0.68 0.316668
Target:  5'- --cGUGUUCGCCGGgcuguagauaucCGCUGCgGUCGa -3'
miRNA:   3'- ucaCACAGGCGGCC------------GCGGCGaCAGCc -5'
18788 3' -61.3 NC_004683.1 + 13945 0.68 0.316668
Target:  5'- cGUGaUGUCagCGCCGGCGCgGUccUCGGu -3'
miRNA:   3'- uCAC-ACAG--GCGGCCGCGgCGacAGCC- -5'
18788 3' -61.3 NC_004683.1 + 10215 0.69 0.295056
Target:  5'- cGUGUGgggUGCCGGCGUacuUGCUGgcgCGGu -3'
miRNA:   3'- uCACACag-GCGGCCGCG---GCGACa--GCC- -5'
18788 3' -61.3 NC_004683.1 + 46111 0.69 0.268052
Target:  5'- cGUGgcgcggGaCCGCuCGGcCGCCGC-GUCGGg -3'
miRNA:   3'- uCACa-----CaGGCG-GCC-GCGGCGaCAGCC- -5'
18788 3' -61.3 NC_004683.1 + 6666 0.7 0.26162
Target:  5'- cGUGcUGgCCGCgGcGCGCCGCUGgugUGGc -3'
miRNA:   3'- uCAC-ACaGGCGgC-CGCGGCGACa--GCC- -5'
18788 3' -61.3 NC_004683.1 + 15614 0.71 0.220071
Target:  5'- --cGUGgCCGCgGGCacGCCGCUG-CGGa -3'
miRNA:   3'- ucaCACaGGCGgCCG--CGGCGACaGCC- -5'
18788 3' -61.3 NC_004683.1 + 42622 0.74 0.142106
Target:  5'- uGGUGUGcgUCGCgCGGCGCCaCUcGUCGGu -3'
miRNA:   3'- -UCACACa-GGCG-GCCGCGGcGA-CAGCC- -5'
18788 3' -61.3 NC_004683.1 + 23800 0.75 0.12123
Target:  5'- gGGUgGUGccgCCGCCGGUGCCGCcG-CGGc -3'
miRNA:   3'- -UCA-CACa--GGCGGCCGCGGCGaCaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.