Results 21 - 23 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18788 | 3' | -61.3 | NC_004683.1 | + | 46111 | 0.69 | 0.268052 |
Target: 5'- cGUGgcgcggGaCCGCuCGGcCGCCGC-GUCGGg -3' miRNA: 3'- uCACa-----CaGGCG-GCC-GCGGCGaCAGCC- -5' |
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18788 | 3' | -61.3 | NC_004683.1 | + | 48531 | 0.68 | 0.355288 |
Target: 5'- --aGUGUCCucGCCGGCaCCGUcacaaacGUCGGg -3' miRNA: 3'- ucaCACAGG--CGGCCGcGGCGa------CAGCC- -5' |
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18788 | 3' | -61.3 | NC_004683.1 | + | 55044 | 0.66 | 0.464489 |
Target: 5'- cGGUGUGcguagaucaugcagCCGCgGGCGCCGgUGagagCGa -3' miRNA: 3'- -UCACACa-------------GGCGgCCGCGGCgACa---GCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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