Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18789 | 3' | -57.3 | NC_004683.1 | + | 42642 | 0.67 | 0.538426 |
Target: 5'- gGCGCGCuCGGccucgcucaUGGUGugcGUCGcGCgGCGCc -3' miRNA: 3'- -UGCGCG-GCU---------ACCAC---UAGUaCGgCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 15093 | 0.67 | 0.538426 |
Target: 5'- cCGCGCCGA-GGcgcGAguUCGUGCCGUu- -3' miRNA: 3'- uGCGCGGCUaCCa--CU--AGUACGGCGcg -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 21105 | 0.67 | 0.527958 |
Target: 5'- cAC-CGUCGGcgaccaagguguUGGUGcUgAUGCCGCGCu -3' miRNA: 3'- -UGcGCGGCU------------ACCACuAgUACGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 20672 | 0.67 | 0.527958 |
Target: 5'- -gGUGCCGAUGuUGAUC--GCCGCa- -3' miRNA: 3'- ugCGCGGCUACcACUAGuaCGGCGcg -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 52341 | 0.68 | 0.517567 |
Target: 5'- -gGCGUCGAgcucGUGcgCcuugGUGCCGCGCc -3' miRNA: 3'- ugCGCGGCUac--CACuaG----UACGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 47282 | 0.68 | 0.517567 |
Target: 5'- cGCGCgGCCGGUggGGUGAccgcguugCcgGCCugGCGCa -3' miRNA: 3'- -UGCG-CGGCUA--CCACUa-------GuaCGG--CGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 6722 | 0.68 | 0.511372 |
Target: 5'- -gGCGUCGAUggcagccugagccucGGUGuuGUCGgcgaacugGCCGCGCa -3' miRNA: 3'- ugCGCGGCUA---------------CCAC--UAGUa-------CGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 14826 | 0.68 | 0.497039 |
Target: 5'- uACGCGCCcaca--GAUCGUugGCCGCGCc -3' miRNA: 3'- -UGCGCGGcuaccaCUAGUA--CGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 51626 | 0.68 | 0.486912 |
Target: 5'- gUGCGCUGgcGGcGcgCcUGCCGUGCg -3' miRNA: 3'- uGCGCGGCuaCCaCuaGuACGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 55376 | 0.68 | 0.46696 |
Target: 5'- -gGCGCCGAaucc-GUCGUGCUGUGCg -3' miRNA: 3'- ugCGCGGCUaccacUAGUACGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 47042 | 0.68 | 0.46302 |
Target: 5'- cACGCGCgGuGUGGUGGcgcaucagcagcgCGUGCCGCu- -3' miRNA: 3'- -UGCGCGgC-UACCACUa------------GUACGGCGcg -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 50353 | 0.69 | 0.457143 |
Target: 5'- cCGCGCCGAgc-UGAUCGcgauggGCCGCuGCc -3' miRNA: 3'- uGCGCGGCUaccACUAGUa-----CGGCG-CG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 36957 | 0.69 | 0.447438 |
Target: 5'- uUGCGCUGAaaccGUGGUCGUcCUGCGCg -3' miRNA: 3'- uGCGCGGCUac--CACUAGUAcGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 51945 | 0.69 | 0.446474 |
Target: 5'- uCGCG-CGGUGGUGcagcucgagcgcgGUCGgccGCCGUGCg -3' miRNA: 3'- uGCGCgGCUACCAC-------------UAGUa--CGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 54147 | 0.69 | 0.437848 |
Target: 5'- uCGaCGCCGAgcGGccaaaGGUCAacgGCCGCGCg -3' miRNA: 3'- uGC-GCGGCUa-CCa----CUAGUa--CGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 48357 | 0.69 | 0.437848 |
Target: 5'- aGCG-GCC-AUGGUGAUUc-GCUGCGCa -3' miRNA: 3'- -UGCgCGGcUACCACUAGuaCGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 52036 | 0.69 | 0.428378 |
Target: 5'- cCGCGCCGA-GGcUGGgaacCGUGCCcgacGCGCc -3' miRNA: 3'- uGCGCGGCUaCC-ACUa---GUACGG----CGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 24052 | 0.69 | 0.428378 |
Target: 5'- uCGCGCCGAgGGgca-CGUaGCCGUGCu -3' miRNA: 3'- uGCGCGGCUaCCacuaGUA-CGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 5920 | 0.69 | 0.409806 |
Target: 5'- -gGCGCCu-UGGcGGcgGUGCCGCGCg -3' miRNA: 3'- ugCGCGGcuACCaCUagUACGGCGCG- -5' |
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18789 | 3' | -57.3 | NC_004683.1 | + | 48502 | 0.69 | 0.409806 |
Target: 5'- -aGCGgUGgcGGUgcGAUCaAUGCCGCGCc -3' miRNA: 3'- ugCGCgGCuaCCA--CUAG-UACGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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