miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1879 3' -53.8 NC_001347.2 + 161822 0.65 0.990362
Target:  5'- aGCCcuGCUGCGUCUUggcgccggccgaaGCCUcgcCGUGCUg -3'
miRNA:   3'- -CGGuuUGGCGCAGGG-------------UGGAu--GCAUGA- -5'
1879 3' -53.8 NC_001347.2 + 34540 0.66 0.989212
Target:  5'- cGCCGcAGCUGUcugGUCCauucaGCCUGCGcUACg -3'
miRNA:   3'- -CGGU-UUGGCG---CAGGg----UGGAUGC-AUGa -5'
1879 3' -53.8 NC_001347.2 + 102055 0.66 0.989212
Target:  5'- aUCGAcGCCGCgGUCUCACCgAgGUGCUc -3'
miRNA:   3'- cGGUU-UGGCG-CAGGGUGGaUgCAUGA- -5'
1879 3' -53.8 NC_001347.2 + 120530 0.66 0.987811
Target:  5'- cGCCAAcgacaucuACCGCaUCUCGCCgaauuggaagGCGUAUg -3'
miRNA:   3'- -CGGUU--------UGGCGcAGGGUGGa---------UGCAUGa -5'
1879 3' -53.8 NC_001347.2 + 199834 0.66 0.987811
Target:  5'- gGCCGAACCcCGUCagCACCccGCGUcACUu -3'
miRNA:   3'- -CGGUUUGGcGCAGg-GUGGa-UGCA-UGA- -5'
1879 3' -53.8 NC_001347.2 + 113616 0.66 0.987811
Target:  5'- cGCC--GCCGcCGUCgCCACCUcCGgcGCUg -3'
miRNA:   3'- -CGGuuUGGC-GCAG-GGUGGAuGCa-UGA- -5'
1879 3' -53.8 NC_001347.2 + 22172 0.66 0.986274
Target:  5'- gGCgGAGCCGCGUCgCuCGCCgGCGc--- -3'
miRNA:   3'- -CGgUUUGGCGCAG-G-GUGGaUGCauga -5'
1879 3' -53.8 NC_001347.2 + 142168 0.66 0.986274
Target:  5'- uUCGAgcACCGCGUCCaCACCgcccacacgACGUcgGCa -3'
miRNA:   3'- cGGUU--UGGCGCAGG-GUGGa--------UGCA--UGa -5'
1879 3' -53.8 NC_001347.2 + 122040 0.66 0.986274
Target:  5'- uCCGuACUGgGUCCCAUUUcggggcACGUGCUg -3'
miRNA:   3'- cGGUuUGGCgCAGGGUGGA------UGCAUGA- -5'
1879 3' -53.8 NC_001347.2 + 228442 0.66 0.984592
Target:  5'- cGCCGcaccCCGCGUCgCugCUGacggcCGUGCg -3'
miRNA:   3'- -CGGUuu--GGCGCAGgGugGAU-----GCAUGa -5'
1879 3' -53.8 NC_001347.2 + 226528 0.66 0.984592
Target:  5'- cCCu--CUGCGUCCCACC---GUACUu -3'
miRNA:   3'- cGGuuuGGCGCAGGGUGGaugCAUGA- -5'
1879 3' -53.8 NC_001347.2 + 68670 0.66 0.984592
Target:  5'- uGCCAGACCGC-UUCCACCg------- -3'
miRNA:   3'- -CGGUUUGGCGcAGGGUGGaugcauga -5'
1879 3' -53.8 NC_001347.2 + 47144 0.66 0.984592
Target:  5'- aGUCu-GCCGCGUCUCggggGCUUGCGUGu- -3'
miRNA:   3'- -CGGuuUGGCGCAGGG----UGGAUGCAUga -5'
1879 3' -53.8 NC_001347.2 + 138274 0.66 0.982758
Target:  5'- uCCAGGCCGUcUCCCagugugACCUGCGccGCg -3'
miRNA:   3'- cGGUUUGGCGcAGGG------UGGAUGCa-UGa -5'
1879 3' -53.8 NC_001347.2 + 104975 0.66 0.982758
Target:  5'- cGUCGcAGCCGCG-CCgGCCUcgagcAUGUACg -3'
miRNA:   3'- -CGGU-UUGGCGCaGGgUGGA-----UGCAUGa -5'
1879 3' -53.8 NC_001347.2 + 116754 0.67 0.980764
Target:  5'- gGCCAAcguACCGCGacgCCgACCcACGcUGCa -3'
miRNA:   3'- -CGGUU---UGGCGCa--GGgUGGaUGC-AUGa -5'
1879 3' -53.8 NC_001347.2 + 119815 0.67 0.980764
Target:  5'- cGCUGGACCGCGUgCCCGUUaGCGgACUg -3'
miRNA:   3'- -CGGUUUGGCGCA-GGGUGGaUGCaUGA- -5'
1879 3' -53.8 NC_001347.2 + 90987 0.67 0.978603
Target:  5'- aGgCGGAUCGCGUgCCUACCgaucuggcgGCGUugUg -3'
miRNA:   3'- -CgGUUUGGCGCA-GGGUGGa--------UGCAugA- -5'
1879 3' -53.8 NC_001347.2 + 1526 0.67 0.971044
Target:  5'- aGCCGAguGCUGCGcCCuCGCCaAUGUugUg -3'
miRNA:   3'- -CGGUU--UGGCGCaGG-GUGGaUGCAugA- -5'
1879 3' -53.8 NC_001347.2 + 103720 0.67 0.971044
Target:  5'- -gCAGAUcaaCGCGUUCCGCgaACGUGCg -3'
miRNA:   3'- cgGUUUG---GCGCAGGGUGgaUGCAUGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.