miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1879 5' -57.4 NC_001347.2 + 192271 0.66 0.934138
Target:  5'- gCGGcCUCGgcGGCGgGCGCCGacucGcGUCc -3'
miRNA:   3'- aGUU-GAGCaaCCGCgCGCGGCa---C-CAG- -5'
1879 5' -57.4 NC_001347.2 + 30520 0.66 0.929222
Target:  5'- --cGCUCGguuucUUGGCG-GCGCCGgugccgccGGUCu -3'
miRNA:   3'- aguUGAGC-----AACCGCgCGCGGCa-------CCAG- -5'
1879 5' -57.4 NC_001347.2 + 151927 0.66 0.929222
Target:  5'- cCGGCguggUGggacccGGCG-GCGCCGUGGUg -3'
miRNA:   3'- aGUUGa---GCaa----CCGCgCGCGGCACCAg -5'
1879 5' -57.4 NC_001347.2 + 77062 0.66 0.929222
Target:  5'- gCAGCgugaggCGcgGGCGCGCGUCGgccGG-Cg -3'
miRNA:   3'- aGUUGa-----GCaaCCGCGCGCGGCa--CCaG- -5'
1879 5' -57.4 NC_001347.2 + 49821 0.66 0.924083
Target:  5'- cCAGCUcCGUUcGCGCaGCGCCcUGGg- -3'
miRNA:   3'- aGUUGA-GCAAcCGCG-CGCGGcACCag -5'
1879 5' -57.4 NC_001347.2 + 42332 0.66 0.918723
Target:  5'- gUCGGCgcacaCGUUuuugGGCGCGCGCuCGccGUCg -3'
miRNA:   3'- -AGUUGa----GCAA----CCGCGCGCG-GCacCAG- -5'
1879 5' -57.4 NC_001347.2 + 76633 0.66 0.91257
Target:  5'- aCGGcCUCGUUGGUGaCGCggauguuGCCGgcgcacuggGGUCg -3'
miRNA:   3'- aGUU-GAGCAACCGC-GCG-------CGGCa--------CCAG- -5'
1879 5' -57.4 NC_001347.2 + 82404 0.67 0.89508
Target:  5'- -aGGC-CGUUGGCGUagccauugGgGCCGUGGg- -3'
miRNA:   3'- agUUGaGCAACCGCG--------CgCGGCACCag -5'
1879 5' -57.4 NC_001347.2 + 65621 0.68 0.853309
Target:  5'- -aAGCUCGUcgaaGGaCG-GCGCCGUGGcCg -3'
miRNA:   3'- agUUGAGCAa---CC-GCgCGCGGCACCaG- -5'
1879 5' -57.4 NC_001347.2 + 22232 0.68 0.821678
Target:  5'- gCGGCguUCGUUGGCGcCGCuGCCGcgucgGGUa -3'
miRNA:   3'- aGUUG--AGCAACCGC-GCG-CGGCa----CCAg -5'
1879 5' -57.4 NC_001347.2 + 144776 0.69 0.812512
Target:  5'- gCGGCUUGagcgGGCGCGCGCgcuugagCGUGGcCc -3'
miRNA:   3'- aGUUGAGCaa--CCGCGCGCG-------GCACCaG- -5'
1879 5' -57.4 NC_001347.2 + 131815 0.69 0.804874
Target:  5'- gUguGCUUGaucUUGGUGUGCGCCGUgaGGUUc -3'
miRNA:   3'- -AguUGAGC---AACCGCGCGCGGCA--CCAG- -5'
1879 5' -57.4 NC_001347.2 + 177801 0.7 0.75954
Target:  5'- -uGugUCGggugUGGCugucuguuugucuGUGCGCCGUGGUg -3'
miRNA:   3'- agUugAGCa---ACCG-------------CGCGCGGCACCAg -5'
1879 5' -57.4 NC_001347.2 + 230151 0.7 0.751225
Target:  5'- -uGugUCGcgGGCGUGUGCCG-GGUg -3'
miRNA:   3'- agUugAGCaaCCGCGCGCGGCaCCAg -5'
1879 5' -57.4 NC_001347.2 + 672 0.7 0.751225
Target:  5'- -uGugUCGcgGGCGUGUGCCG-GGUg -3'
miRNA:   3'- agUugAGCaaCCGCGCGCGGCaCCAg -5'
1879 5' -57.4 NC_001347.2 + 72135 0.7 0.751225
Target:  5'- gUCGACUCaaGUgcgagcgccaucUGGaCGCGCgcucgcuggugGCCGUGGUCu -3'
miRNA:   3'- -AGUUGAG--CA------------ACC-GCGCG-----------CGGCACCAG- -5'
1879 5' -57.4 NC_001347.2 + 204944 0.7 0.751225
Target:  5'- gUCGACUguugcCGcgUGGCGCugcacaccuaugGCGCCGUGGg- -3'
miRNA:   3'- -AGUUGA-----GCa-ACCGCG------------CGCGGCACCag -5'
1879 5' -57.4 NC_001347.2 + 21589 0.7 0.722976
Target:  5'- gCAGgUCGUgcacgucGGCcaccaGCGCCGUGGUCu -3'
miRNA:   3'- aGUUgAGCAa------CCGcg---CGCGGCACCAG- -5'
1879 5' -57.4 NC_001347.2 + 45873 0.71 0.664738
Target:  5'- -gGACUCGUgaaGCG-GCGCCG-GGUCg -3'
miRNA:   3'- agUUGAGCAac-CGCgCGCGGCaCCAG- -5'
1879 5' -57.4 NC_001347.2 + 47441 0.71 0.664738
Target:  5'- -gAGCUCGcccuCGCGCGCCGUGGg- -3'
miRNA:   3'- agUUGAGCaaccGCGCGCGGCACCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.