miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18790 3' -58.6 NC_004683.1 + 53239 0.66 0.575698
Target:  5'- uGAUCugCCgGGUGAgcGGUGUcggggGCGCGa -3'
miRNA:   3'- gCUGGugGGgCCACUa-CUACG-----CGCGU- -5'
18790 3' -58.6 NC_004683.1 + 10849 0.66 0.575698
Target:  5'- uGGCCACCCuCGGa-GUGAUGgGUGg- -3'
miRNA:   3'- gCUGGUGGG-GCCacUACUACgCGCgu -5'
18790 3' -58.6 NC_004683.1 + 30582 0.66 0.565119
Target:  5'- uCGACCACaUCCuucaGGUGAg---GCGCGCc -3'
miRNA:   3'- -GCUGGUG-GGG----CCACUacuaCGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 40188 0.66 0.565118
Target:  5'- gCGGCCGCgUCCGGcUGGucUGucaagGCGCGCu -3'
miRNA:   3'- -GCUGGUG-GGGCC-ACU--ACua---CGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 14312 0.66 0.55459
Target:  5'- uCGACCucgauacggGCCgCUGGUGGUcgGAUGUGCGg- -3'
miRNA:   3'- -GCUGG---------UGG-GGCCACUA--CUACGCGCgu -5'
18790 3' -58.6 NC_004683.1 + 6512 0.66 0.55459
Target:  5'- uGACCucgaCCGGUucGAacaGGUGCGCGCGa -3'
miRNA:   3'- gCUGGugg-GGCCA--CUa--CUACGCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 40380 0.66 0.55459
Target:  5'- gCGGCgauGCCCuCGGcGAUGccaGCGCGCAg -3'
miRNA:   3'- -GCUGg--UGGG-GCCaCUACua-CGCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 46827 0.66 0.55459
Target:  5'- aGGCCAucguUCUCGcGUG-UGGUGCGCGUc -3'
miRNA:   3'- gCUGGU----GGGGC-CACuACUACGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 47049 0.66 0.544121
Target:  5'- uGAUCGCCacgcgCGGUG-UGGUG-GCGCAu -3'
miRNA:   3'- gCUGGUGGg----GCCACuACUACgCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 52687 0.67 0.517221
Target:  5'- gGACCGCCCCGaGUGccgGGUacagcuguacgccaaGCGCGg- -3'
miRNA:   3'- gCUGGUGGGGC-CACua-CUA---------------CGCGCgu -5'
18790 3' -58.6 NC_004683.1 + 13467 0.67 0.502957
Target:  5'- gGGCCACCCUGGcccaUGAaUGGcaGCGUGCc -3'
miRNA:   3'- gCUGGUGGGGCC----ACU-ACUa-CGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 20437 0.67 0.502957
Target:  5'- cCGGCCuuaCCUGGUGAcgagguguaugUGGUGCuguucGCGCGg -3'
miRNA:   3'- -GCUGGug-GGGCCACU-----------ACUACG-----CGCGU- -5'
18790 3' -58.6 NC_004683.1 + 6599 0.67 0.502957
Target:  5'- aCGACCugCCCGccaa-GGUGCGCGg- -3'
miRNA:   3'- -GCUGGugGGGCcacuaCUACGCGCgu -5'
18790 3' -58.6 NC_004683.1 + 4041 0.67 0.499923
Target:  5'- aGGCCAUcgacggcaugucguUCCGGUucucGGUGGUGCGCGa- -3'
miRNA:   3'- gCUGGUG--------------GGGCCA----CUACUACGCGCgu -5'
18790 3' -58.6 NC_004683.1 + 12055 0.67 0.492874
Target:  5'- gCGACaGCCCCGGUG-UGGgcaGCG-GCGg -3'
miRNA:   3'- -GCUGgUGGGGCCACuACUa--CGCgCGU- -5'
18790 3' -58.6 NC_004683.1 + 25909 0.67 0.492874
Target:  5'- uGGCCGCCUCGGUGuucgGGUacuaCGCGUu -3'
miRNA:   3'- gCUGGUGGGGCCACua--CUAc---GCGCGu -5'
18790 3' -58.6 NC_004683.1 + 49318 0.67 0.492874
Target:  5'- uGACCGCCCCGac-----UGCGCGCu -3'
miRNA:   3'- gCUGGUGGGGCcacuacuACGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 23060 0.67 0.463207
Target:  5'- uCGGCCugCUCGGcggccUGGUGcucaccgGCGCGCu -3'
miRNA:   3'- -GCUGGugGGGCC-----ACUACua-----CGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 42653 0.68 0.457386
Target:  5'- cCGACCGCCgCGGcGcgcucggccucgcucAUGGUGUGCGUc -3'
miRNA:   3'- -GCUGGUGGgGCCaC---------------UACUACGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 2884 0.68 0.453527
Target:  5'- gCGACCACCCuCGGUGuaGAgguaaccgaccuUGCGC-CAa -3'
miRNA:   3'- -GCUGGUGGG-GCCACuaCU------------ACGCGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.