miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18790 3' -58.6 NC_004683.1 + 20481 0.68 0.443958
Target:  5'- uGGCCGCCCCGG-----GUGCGcCGCc -3'
miRNA:   3'- gCUGGUGGGGCCacuacUACGC-GCGu -5'
18790 3' -58.6 NC_004683.1 + 20036 0.68 0.443958
Target:  5'- gCGGCCAgaCCGGUGAUacgGCGCGg- -3'
miRNA:   3'- -GCUGGUggGGCCACUAcuaCGCGCgu -5'
18790 3' -58.6 NC_004683.1 + 53854 0.68 0.425167
Target:  5'- uCGugCACCCCGGcGAUGAgaaGgGCc -3'
miRNA:   3'- -GCugGUGGGGCCaCUACUacgCgCGu -5'
18790 3' -58.6 NC_004683.1 + 26550 0.68 0.415951
Target:  5'- gCGAUCACCCUGGcUGGU--UGCGcCGCc -3'
miRNA:   3'- -GCUGGUGGGGCC-ACUAcuACGC-GCGu -5'
18790 3' -58.6 NC_004683.1 + 45784 0.68 0.406858
Target:  5'- gCGAUCGagauCCCCGGcgUGGaGGUGCGCGUc -3'
miRNA:   3'- -GCUGGU----GGGGCC--ACUaCUACGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 11198 0.69 0.371763
Target:  5'- uCGAgCACCCCGGaUGucgccugGAUGCGCuCGa -3'
miRNA:   3'- -GCUgGUGGGGCC-ACua-----CUACGCGcGU- -5'
18790 3' -58.6 NC_004683.1 + 5256 0.69 0.363317
Target:  5'- uCGAUgAUCuuGGUGGcgGcgGCGCGCAc -3'
miRNA:   3'- -GCUGgUGGggCCACUa-CuaCGCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 1041 0.69 0.355006
Target:  5'- aCGGCCACCaCUGu---UGGUGCGCGCc -3'
miRNA:   3'- -GCUGGUGG-GGCcacuACUACGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 21973 0.7 0.338789
Target:  5'- cCGGCCAggCgGGUGGUGcugGCGCGCGc -3'
miRNA:   3'- -GCUGGUggGgCCACUACua-CGCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 31168 0.7 0.315484
Target:  5'- uGcCCGCCacgggGGUGAUGAcuacUGCGCGCGg -3'
miRNA:   3'- gCuGGUGGgg---CCACUACU----ACGCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 22841 0.71 0.293411
Target:  5'- -uGCCGCCCuCGGUGAUGucgGCGgcUGCAc -3'
miRNA:   3'- gcUGGUGGG-GCCACUACua-CGC--GCGU- -5'
18790 3' -58.6 NC_004683.1 + 41534 0.71 0.293411
Target:  5'- aCGAUCuCCCCGGccucGGUGCGCGUAu -3'
miRNA:   3'- -GCUGGuGGGGCCacuaCUACGCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 19230 0.71 0.286326
Target:  5'- uGGCCGCCgCCGGgucGAacgcGGUGCGCGUc -3'
miRNA:   3'- gCUGGUGG-GGCCa--CUa---CUACGCGCGu -5'
18790 3' -58.6 NC_004683.1 + 52562 0.71 0.279377
Target:  5'- cCGAgCCagcgcgcgagACCCUGcGUGGUGAUGuCGCGCGg -3'
miRNA:   3'- -GCU-GG----------UGGGGC-CACUACUAC-GCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 16589 0.71 0.275272
Target:  5'- uGGCCACgCCCGGUGAcccgucgaaaaacgGGUugGUGCGCAc -3'
miRNA:   3'- gCUGGUG-GGGCCACUa-------------CUA--CGCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 2120 0.73 0.211612
Target:  5'- uGGCCaucGCCCUGGUGGUGgcGgGCGUg -3'
miRNA:   3'- gCUGG---UGGGGCCACUACuaCgCGCGu -5'
18790 3' -58.6 NC_004683.1 + 19100 0.74 0.180954
Target:  5'- gGAuCUACCCCGcUGG-GAUGCGCGCGg -3'
miRNA:   3'- gCU-GGUGGGGCcACUaCUACGCGCGU- -5'
18790 3' -58.6 NC_004683.1 + 21763 1.09 0.000553
Target:  5'- cCGACCACCCCGGUGAUGAUGCGCGCAg -3'
miRNA:   3'- -GCUGGUGGGGCCACUACUACGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.