miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18791 3' -53.7 NC_004683.1 + 3111 0.66 0.832544
Target:  5'- uUCACCGC--GGCCGggUCGGccAUCGGg- -3'
miRNA:   3'- -AGUGGCGugCUGGCa-AGCC--UAGCUau -5'
18791 3' -53.7 NC_004683.1 + 10566 0.66 0.832544
Target:  5'- -gACCGCAUcgucgcucaGGCUGagCGGGUCGAg- -3'
miRNA:   3'- agUGGCGUG---------CUGGCaaGCCUAGCUau -5'
18791 3' -53.7 NC_004683.1 + 51879 0.66 0.823455
Target:  5'- cCACCGCGCGAuCCGUgauggcgcCGGAaccccaCGAUc -3'
miRNA:   3'- aGUGGCGUGCU-GGCAa-------GCCUa-----GCUAu -5'
18791 3' -53.7 NC_004683.1 + 4528 0.66 0.814163
Target:  5'- aUCGCUGCGCG-UCG-UCGGAcUCGGc- -3'
miRNA:   3'- -AGUGGCGUGCuGGCaAGCCU-AGCUau -5'
18791 3' -53.7 NC_004683.1 + 8807 0.67 0.775176
Target:  5'- gCGCCG-GCGAgauaccagccuUCGUUCGGGUUGGUGu -3'
miRNA:   3'- aGUGGCgUGCU-----------GGCAAGCCUAGCUAU- -5'
18791 3' -53.7 NC_004683.1 + 30788 0.67 0.774168
Target:  5'- gCugCGCACGccgcccggaacGCCGUcagugcgcgcagcUCGGaAUCGAUGa -3'
miRNA:   3'- aGugGCGUGC-----------UGGCA-------------AGCC-UAGCUAU- -5'
18791 3' -53.7 NC_004683.1 + 724 0.67 0.754745
Target:  5'- aCGCCGU-CGACCGgccaUUCGaGUCGAUGc -3'
miRNA:   3'- aGUGGCGuGCUGGC----AAGCcUAGCUAU- -5'
18791 3' -53.7 NC_004683.1 + 22015 0.67 0.754745
Target:  5'- gCACCGcCACcGCCGggCGGAUUGc-- -3'
miRNA:   3'- aGUGGC-GUGcUGGCaaGCCUAGCuau -5'
18791 3' -53.7 NC_004683.1 + 16379 0.68 0.723182
Target:  5'- gUCGCUgaaucccgauguGCGCG-CCugGUUCGGAUCGAUc -3'
miRNA:   3'- -AGUGG------------CGUGCuGG--CAAGCCUAGCUAu -5'
18791 3' -53.7 NC_004683.1 + 6208 0.68 0.690799
Target:  5'- -aGCCGCGCGACCcGUUgGGccggCGGUu -3'
miRNA:   3'- agUGGCGUGCUGG-CAAgCCua--GCUAu -5'
18791 3' -53.7 NC_004683.1 + 14408 0.68 0.687527
Target:  5'- cCACCGCacauccgaccaccaGCGGcCCGUaUCGaGGUCGAUGa -3'
miRNA:   3'- aGUGGCG--------------UGCU-GGCA-AGC-CUAGCUAU- -5'
18791 3' -53.7 NC_004683.1 + 6948 0.69 0.657903
Target:  5'- gCGCCGUccaGCGGCCGUagGGcUUGGUAa -3'
miRNA:   3'- aGUGGCG---UGCUGGCAagCCuAGCUAU- -5'
18791 3' -53.7 NC_004683.1 + 11511 0.69 0.624789
Target:  5'- cCACCGCACGAgcagCGUUCGGcgCcGUGc -3'
miRNA:   3'- aGUGGCGUGCUg---GCAAGCCuaGcUAU- -5'
18791 3' -53.7 NC_004683.1 + 9943 0.7 0.590633
Target:  5'- gCACCGCgGCGACCGUgacgagCGGGgcugccugaagcgUCGAg- -3'
miRNA:   3'- aGUGGCG-UGCUGGCAa-----GCCU-------------AGCUau -5'
18791 3' -53.7 NC_004683.1 + 6068 0.7 0.557897
Target:  5'- gUCAUCGC-CGACCGUaUCGGcaugacgGUCGAg- -3'
miRNA:   3'- -AGUGGCGuGCUGGCA-AGCC-------UAGCUau -5'
18791 3' -53.7 NC_004683.1 + 54240 0.71 0.544941
Target:  5'- -gAgCGCGCGGCCGUugaccuuuggccgcUCGGcGUCGAUAu -3'
miRNA:   3'- agUgGCGUGCUGGCA--------------AGCC-UAGCUAU- -5'
18791 3' -53.7 NC_004683.1 + 10043 0.72 0.478809
Target:  5'- aCGCCGC-CGAgCCGUUCGGccgcggcggcgacugGUCGAUc -3'
miRNA:   3'- aGUGGCGuGCU-GGCAAGCC---------------UAGCUAu -5'
18791 3' -53.7 NC_004683.1 + 10131 0.72 0.46464
Target:  5'- gUCGCCGcCGCGGCCGaaCGGcUCGGc- -3'
miRNA:   3'- -AGUGGC-GUGCUGGCaaGCCuAGCUau -5'
18791 3' -53.7 NC_004683.1 + 43200 0.72 0.444785
Target:  5'- -aGCCGCACG-CCGgucUCGGgGUCGGUGu -3'
miRNA:   3'- agUGGCGUGCuGGCa--AGCC-UAGCUAU- -5'
18791 3' -53.7 NC_004683.1 + 16731 0.73 0.425415
Target:  5'- aUCuuCCGCACGACCGU--GGAucUCGGUGg -3'
miRNA:   3'- -AGu-GGCGUGCUGGCAagCCU--AGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.