miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18791 5' -60.7 NC_004683.1 + 45863 0.66 0.48483
Target:  5'- aCC-CCGACGCCGaCCauguGUGcGCCGa-- -3'
miRNA:   3'- gGGuGGUUGCGGC-GGg---CAC-CGGCaug -5'
18791 5' -60.7 NC_004683.1 + 25242 0.66 0.48483
Target:  5'- gCCGCCGAUGaCCGagCCGagcaGGCCGcUACc -3'
miRNA:   3'- gGGUGGUUGC-GGCg-GGCa---CCGGC-AUG- -5'
18791 5' -60.7 NC_004683.1 + 44454 0.66 0.48483
Target:  5'- gCCACC-GCGCCggcGCCCGacgugcagaUGGCCa--- -3'
miRNA:   3'- gGGUGGuUGCGG---CGGGC---------ACCGGcaug -5'
18791 5' -60.7 NC_004683.1 + 52599 0.66 0.48483
Target:  5'- aCCgGCCcgaGCCaCCCGaguacugcgGGCCGUGCc -3'
miRNA:   3'- -GGgUGGuugCGGcGGGCa--------CCGGCAUG- -5'
18791 5' -60.7 NC_004683.1 + 13211 0.66 0.48483
Target:  5'- aCCCACCAucccugcuGCGCCGagcgucaCCGUGuacCCGUc- -3'
miRNA:   3'- -GGGUGGU--------UGCGGCg------GGCACc--GGCAug -5'
18791 5' -60.7 NC_004683.1 + 54377 0.66 0.475108
Target:  5'- aCCCGacCCAACGCaUGCCC--GGCCGcaACg -3'
miRNA:   3'- -GGGU--GGUUGCG-GCGGGcaCCGGCa-UG- -5'
18791 5' -60.7 NC_004683.1 + 4044 0.66 0.475108
Target:  5'- gCUACCAcgugcGCGCCGCCCucgGGUgCGaGCa -3'
miRNA:   3'- gGGUGGU-----UGCGGCGGGca-CCG-GCaUG- -5'
18791 5' -60.7 NC_004683.1 + 13199 0.66 0.475108
Target:  5'- uCCCGCCGAUGCCcCuCCGggcaGCCGccGCg -3'
miRNA:   3'- -GGGUGGUUGCGGcG-GGCac--CGGCa-UG- -5'
18791 5' -60.7 NC_004683.1 + 43552 0.66 0.475108
Target:  5'- -aCACCGAC-CCGCUCGaagaGGCCG-ACc -3'
miRNA:   3'- ggGUGGUUGcGGCGGGCa---CCGGCaUG- -5'
18791 5' -60.7 NC_004683.1 + 11509 0.66 0.475108
Target:  5'- cCCCACCGcACGagcagCGUUCG-GcGCCGUGCu -3'
miRNA:   3'- -GGGUGGU-UGCg----GCGGGCaC-CGGCAUG- -5'
18791 5' -60.7 NC_004683.1 + 40328 0.66 0.473175
Target:  5'- aCUCAUCGACGCgCGCCUGcagcucggcgcgGGCC-UGCu -3'
miRNA:   3'- -GGGUGGUUGCG-GCGGGCa-----------CCGGcAUG- -5'
18791 5' -60.7 NC_004683.1 + 648 0.66 0.462617
Target:  5'- cCCCGCCAA-GUCGCacaggucggccaccUCGgGGCCGUAg -3'
miRNA:   3'- -GGGUGGUUgCGGCG--------------GGCaCCGGCAUg -5'
18791 5' -60.7 NC_004683.1 + 9231 0.66 0.455963
Target:  5'- uCCCGCCugggacGCGCUGgCCGgcgacGGCuCGUAa -3'
miRNA:   3'- -GGGUGGu-----UGCGGCgGGCa----CCG-GCAUg -5'
18791 5' -60.7 NC_004683.1 + 21967 0.66 0.455963
Target:  5'- gCCCGCuCAGCGCCaCCgGUGuaCGUcuGCc -3'
miRNA:   3'- -GGGUG-GUUGCGGcGGgCACcgGCA--UG- -5'
18791 5' -60.7 NC_004683.1 + 24336 0.66 0.446548
Target:  5'- aCCCGCgagaugCAACGCCGaCUCGUcGCCGcagGCc -3'
miRNA:   3'- -GGGUG------GUUGCGGC-GGGCAcCGGCa--UG- -5'
18791 5' -60.7 NC_004683.1 + 52232 0.66 0.446548
Target:  5'- gUCCGCCu-CGgCGaCCCG-GGCCGgcgcgGCa -3'
miRNA:   3'- -GGGUGGuuGCgGC-GGGCaCCGGCa----UG- -5'
18791 5' -60.7 NC_004683.1 + 19173 0.66 0.446548
Target:  5'- uCCCAgcgggguagauCCAggcGCGCCGUCgGUGGCguCGUGg -3'
miRNA:   3'- -GGGU-----------GGU---UGCGGCGGgCACCG--GCAUg -5'
18791 5' -60.7 NC_004683.1 + 25760 0.66 0.445612
Target:  5'- gCUGCCGucgagcACGCUGgCCGaggagucUGGCCGUAUg -3'
miRNA:   3'- gGGUGGU------UGCGGCgGGC-------ACCGGCAUG- -5'
18791 5' -60.7 NC_004683.1 + 40053 0.66 0.443745
Target:  5'- gCCCACCGugugcugcaACGCgucgacgcgcuguuCGCCCG-GGCCcaGCg -3'
miRNA:   3'- -GGGUGGU---------UGCG--------------GCGGGCaCCGGcaUG- -5'
18791 5' -60.7 NC_004683.1 + 23790 0.66 0.437242
Target:  5'- gCCGCCggUGCCG-CCGcGGCgGaACg -3'
miRNA:   3'- gGGUGGuuGCGGCgGGCaCCGgCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.