miRNA display CGI


Results 1 - 20 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18791 5' -60.7 NC_004683.1 + 246 0.7 0.251329
Target:  5'- gCCGCCGcUGCUGCCCGcGGCgGgGCu -3'
miRNA:   3'- gGGUGGUuGCGGCGGGCaCCGgCaUG- -5'
18791 5' -60.7 NC_004683.1 + 409 0.68 0.375389
Target:  5'- aUCGCCAAcCGCagCGCCUGcUGGCCGa-- -3'
miRNA:   3'- gGGUGGUU-GCG--GCGGGC-ACCGGCaug -5'
18791 5' -60.7 NC_004683.1 + 648 0.66 0.462617
Target:  5'- cCCCGCCAA-GUCGCacaggucggccaccUCGgGGCCGUAg -3'
miRNA:   3'- -GGGUGGUUgCGGCG--------------GGCaCCGGCAUg -5'
18791 5' -60.7 NC_004683.1 + 868 0.74 0.135615
Target:  5'- cCCCACCAAUGgCGUguuCCGUGGCgCGgGCa -3'
miRNA:   3'- -GGGUGGUUGCgGCG---GGCACCG-GCaUG- -5'
18791 5' -60.7 NC_004683.1 + 1785 0.68 0.350752
Target:  5'- gCCgGCCGACGuuGCCagggcguGUGGCaCGUucuACg -3'
miRNA:   3'- -GGgUGGUUGCggCGGg------CACCG-GCA---UG- -5'
18791 5' -60.7 NC_004683.1 + 1847 0.67 0.383857
Target:  5'- gCCACCAGgGCUcgaaGCCUcUGGCCGa-- -3'
miRNA:   3'- gGGUGGUUgCGG----CGGGcACCGGCaug -5'
18791 5' -60.7 NC_004683.1 + 2101 0.68 0.372873
Target:  5'- aCCGCUgcggugguagucGugGCCaucGCCCuggugguggcgggcGUGGCCGUGCu -3'
miRNA:   3'- gGGUGG------------UugCGG---CGGG--------------CACCGGCAUG- -5'
18791 5' -60.7 NC_004683.1 + 2206 0.7 0.263974
Target:  5'- aCCGCCugUGCCGCgugCCGUGuGCUGcUGCa -3'
miRNA:   3'- gGGUGGuuGCGGCG---GGCAC-CGGC-AUG- -5'
18791 5' -60.7 NC_004683.1 + 2219 0.67 0.395923
Target:  5'- gCCCGCCAGCacgGCCacGCCCGccaccaccagggcgaUGGCCa--- -3'
miRNA:   3'- -GGGUGGUUG---CGG--CGGGC---------------ACCGGcaug -5'
18791 5' -60.7 NC_004683.1 + 3290 0.68 0.375389
Target:  5'- gCCCGCCGACGCCuGgCCGacGGCacaGcACa -3'
miRNA:   3'- -GGGUGGUUGCGG-CgGGCa-CCGg--CaUG- -5'
18791 5' -60.7 NC_004683.1 + 3739 0.67 0.41897
Target:  5'- aCUCuCCAGCGgCGgCCG-GGCCGcACg -3'
miRNA:   3'- -GGGuGGUUGCgGCgGGCaCCGGCaUG- -5'
18791 5' -60.7 NC_004683.1 + 4044 0.66 0.475108
Target:  5'- gCUACCAcgugcGCGCCGCCCucgGGUgCGaGCa -3'
miRNA:   3'- gGGUGGU-----UGCGGCGGGca-CCG-GCaUG- -5'
18791 5' -60.7 NC_004683.1 + 5454 0.67 0.428048
Target:  5'- gCCCGCCAGguCGUCGCCaccggcgaugUGUGGCaCG-GCg -3'
miRNA:   3'- -GGGUGGUU--GCGGCGG----------GCACCG-GCaUG- -5'
18791 5' -60.7 NC_004683.1 + 5818 0.69 0.305003
Target:  5'- gCCCGCgAGCGCggugacgaUGCCCGUgGGCUGg-- -3'
miRNA:   3'- -GGGUGgUUGCG--------GCGGGCA-CCGGCaug -5'
18791 5' -60.7 NC_004683.1 + 6644 0.68 0.358835
Target:  5'- uUCCGCCAuCGCCGUUCucGGCCG-GCg -3'
miRNA:   3'- -GGGUGGUuGCGGCGGGcaCCGGCaUG- -5'
18791 5' -60.7 NC_004683.1 + 6655 0.74 0.139261
Target:  5'- gCCAUCGACGCCGUgC-UGGCCGcgGCg -3'
miRNA:   3'- gGGUGGUUGCGGCGgGcACCGGCa-UG- -5'
18791 5' -60.7 NC_004683.1 + 6752 0.7 0.283904
Target:  5'- gCCaCACCAGCGgCGCgCCGcGGCCa--- -3'
miRNA:   3'- -GG-GUGGUUGCgGCG-GGCaCCGGcaug -5'
18791 5' -60.7 NC_004683.1 + 6829 0.68 0.375389
Target:  5'- gUCGgCAGCgacagcacgcgGCCGCCCG-GGCCGUcgACu -3'
miRNA:   3'- gGGUgGUUG-----------CGGCGGGCaCCGGCA--UG- -5'
18791 5' -60.7 NC_004683.1 + 6960 0.7 0.257588
Target:  5'- uCgCGCCGucgcGCGCCGUCCaGcGGCCGUAg -3'
miRNA:   3'- -GgGUGGU----UGCGGCGGG-CaCCGGCAUg -5'
18791 5' -60.7 NC_004683.1 + 7024 0.7 0.270488
Target:  5'- aCCACCGccCGCCGCCaGUcGGCCGc-- -3'
miRNA:   3'- gGGUGGUu-GCGGCGGgCA-CCGGCaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.