miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18791 5' -60.7 NC_004683.1 + 1785 0.68 0.350752
Target:  5'- gCCgGCCGACGuuGCCagggcguGUGGCaCGUucuACg -3'
miRNA:   3'- -GGgUGGUUGCggCGGg------CACCG-GCA---UG- -5'
18791 5' -60.7 NC_004683.1 + 2206 0.7 0.263974
Target:  5'- aCCGCCugUGCCGCgugCCGUGuGCUGcUGCa -3'
miRNA:   3'- gGGUGGuuGCGGCG---GGCAC-CGGC-AUG- -5'
18791 5' -60.7 NC_004683.1 + 40944 0.7 0.277131
Target:  5'- aCCgCGCCGcCGuuGCCCGUcGGCCa--- -3'
miRNA:   3'- -GG-GUGGUuGCggCGGGCA-CCGGcaug -5'
18791 5' -60.7 NC_004683.1 + 25546 0.69 0.290806
Target:  5'- cUCgGCCugguCGCCGCCC-UGGCCGc-- -3'
miRNA:   3'- -GGgUGGuu--GCGGCGGGcACCGGCaug -5'
18791 5' -60.7 NC_004683.1 + 30777 0.69 0.305003
Target:  5'- gCgCACCGucggcugcgcACGCCGCCCGgaacGCCGUcaguGCg -3'
miRNA:   3'- -GgGUGGU----------UGCGGCGGGCac--CGGCA----UG- -5'
18791 5' -60.7 NC_004683.1 + 26192 0.69 0.305003
Target:  5'- gCCaCACCAACGCgcuCGCCCGccaGGUCGa-- -3'
miRNA:   3'- -GG-GUGGUUGCG---GCGGGCa--CCGGCaug -5'
18791 5' -60.7 NC_004683.1 + 12083 0.69 0.312299
Target:  5'- cUCCACCugAGCGCgGcCCCGgcauGCCGUAUg -3'
miRNA:   3'- -GGGUGG--UUGCGgC-GGGCac--CGGCAUG- -5'
18791 5' -60.7 NC_004683.1 + 8946 0.69 0.312299
Target:  5'- aUCCGCUggUggaGCUGCCCGgcgaGGCCG-ACg -3'
miRNA:   3'- -GGGUGGuuG---CGGCGGGCa---CCGGCaUG- -5'
18791 5' -60.7 NC_004683.1 + 48287 0.68 0.334977
Target:  5'- aUCACCAugGCCGCUgccgaacgUGUGGCuCGg-- -3'
miRNA:   3'- gGGUGGUugCGGCGG--------GCACCG-GCaug -5'
18791 5' -60.7 NC_004683.1 + 41216 0.7 0.257588
Target:  5'- gCCGCCGaggACGCCgccaagcauaaGCCCGUGcGCC-UGCg -3'
miRNA:   3'- gGGUGGU---UGCGG-----------CGGGCAC-CGGcAUG- -5'
18791 5' -60.7 NC_004683.1 + 25480 0.7 0.257588
Target:  5'- gCCACCGcgGCGCUGgCCGUcGCCGUc- -3'
miRNA:   3'- gGGUGGU--UGCGGCgGGCAcCGGCAug -5'
18791 5' -60.7 NC_004683.1 + 11895 0.7 0.257588
Target:  5'- cCCCACCAGCaCCcCCCG-GGCUG-ACu -3'
miRNA:   3'- -GGGUGGUUGcGGcGGGCaCCGGCaUG- -5'
18791 5' -60.7 NC_004683.1 + 17164 0.75 0.121893
Target:  5'- aCUACCAGCGCCGCuCCGacaugGGcCCGaUGCa -3'
miRNA:   3'- gGGUGGUUGCGGCG-GGCa----CC-GGC-AUG- -5'
18791 5' -60.7 NC_004683.1 + 868 0.74 0.135615
Target:  5'- cCCCACCAAUGgCGUguuCCGUGGCgCGgGCa -3'
miRNA:   3'- -GGGUGGUUGCgGCG---GGCACCG-GCaUG- -5'
18791 5' -60.7 NC_004683.1 + 6655 0.74 0.139261
Target:  5'- gCCAUCGACGCCGUgC-UGGCCGcgGCg -3'
miRNA:   3'- gGGUGGUUGCGGCGgGcACCGGCa-UG- -5'
18791 5' -60.7 NC_004683.1 + 12932 0.73 0.163081
Target:  5'- aCCUGCuCGACgGCCGCCCcaccgGUGGCCGg-- -3'
miRNA:   3'- -GGGUG-GUUG-CGGCGGG-----CACCGGCaug -5'
18791 5' -60.7 NC_004683.1 + 46303 0.72 0.190506
Target:  5'- aCCgGCUGACGCgGCCCGaGGCgGUGu -3'
miRNA:   3'- -GGgUGGUUGCGgCGGGCaCCGgCAUg -5'
18791 5' -60.7 NC_004683.1 + 55168 0.72 0.202567
Target:  5'- cCCCACCGAagaacgcaaagccguCGCCGCCCGcaauGCCGa-- -3'
miRNA:   3'- -GGGUGGUU---------------GCGGCGGGCac--CGGCaug -5'
18791 5' -60.7 NC_004683.1 + 40423 0.71 0.241576
Target:  5'- cUCCACCGagccgcagugugggcAC-CCGCCCGUGGCa-UGCa -3'
miRNA:   3'- -GGGUGGU---------------UGcGGCGGGCACCGgcAUG- -5'
18791 5' -60.7 NC_004683.1 + 246 0.7 0.251329
Target:  5'- gCCGCCGcUGCUGCCCGcGGCgGgGCu -3'
miRNA:   3'- gGGUGGUuGCGGCGGGCaCCGgCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.