miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18792 5' -45 NC_004683.1 + 48461 0.66 0.998885
Target:  5'- ---cGGCGCUGAugaaucgcacggcAGccGGAGUGuCGAGCa -3'
miRNA:   3'- gaaaCUGCGACU-------------UCa-CUUUAC-GCUUG- -5'
18792 5' -45 NC_004683.1 + 55053 0.66 0.998555
Target:  5'- --aUGACGCUGcGGUGugcguagaucaugcAGccGCGGGCg -3'
miRNA:   3'- gaaACUGCGACuUCAC--------------UUuaCGCUUG- -5'
18792 5' -45 NC_004683.1 + 10600 0.66 0.998326
Target:  5'- ---aGGCGCgccgcgcUGAGGUGCGGGCg -3'
miRNA:   3'- gaaaCUGCGacuuc--ACUUUACGCUUG- -5'
18792 5' -45 NC_004683.1 + 297 0.66 0.997948
Target:  5'- ---cGGCGCUcGGAGUGGGAUccGUGAc- -3'
miRNA:   3'- gaaaCUGCGA-CUUCACUUUA--CGCUug -5'
18792 5' -45 NC_004683.1 + 2680 0.66 0.997948
Target:  5'- ---cGAuCGUUGAcGGUGAGuucGUGCGGAUg -3'
miRNA:   3'- gaaaCU-GCGACU-UCACUU---UACGCUUG- -5'
18792 5' -45 NC_004683.1 + 13999 0.67 0.996974
Target:  5'- --gUGACGCUGuGGUccuacGAcgggGCGAACa -3'
miRNA:   3'- gaaACUGCGACuUCA-----CUuua-CGCUUG- -5'
18792 5' -45 NC_004683.1 + 45062 0.67 0.996359
Target:  5'- --cUGGCGCUGGAGUGGgccAAUcaGCcGACc -3'
miRNA:   3'- gaaACUGCGACUUCACU---UUA--CGcUUG- -5'
18792 5' -45 NC_004683.1 + 5092 0.67 0.996359
Target:  5'- --gUGACGCcgaaGAGGUcAAggGCGAGCu -3'
miRNA:   3'- gaaACUGCGa---CUUCAcUUuaCGCUUG- -5'
18792 5' -45 NC_004683.1 + 21603 0.68 0.991564
Target:  5'- ---cGGCGCgUGggGUGAGG-GCGGc- -3'
miRNA:   3'- gaaaCUGCG-ACuuCACUUUaCGCUug -5'
18792 5' -45 NC_004683.1 + 48530 0.68 0.990176
Target:  5'- ---cGACGCccGAuAGUGAGucGUGUGGACa -3'
miRNA:   3'- gaaaCUGCGa-CU-UCACUU--UACGCUUG- -5'
18792 5' -45 NC_004683.1 + 49946 0.68 0.988615
Target:  5'- -gUUGGCGCgcaGAGUGuccugGCGAGCc -3'
miRNA:   3'- gaAACUGCGac-UUCACuuua-CGCUUG- -5'
18792 5' -45 NC_004683.1 + 54721 0.69 0.982764
Target:  5'- -gUUGGCGUUcGggGUGuGGcgGCGAAUg -3'
miRNA:   3'- gaAACUGCGA-CuuCAC-UUuaCGCUUG- -5'
18792 5' -45 NC_004683.1 + 15160 0.7 0.968355
Target:  5'- ---cGAUGCUGggGUGGccugGGUGaGGACg -3'
miRNA:   3'- gaaaCUGCGACuuCACU----UUACgCUUG- -5'
18792 5' -45 NC_004683.1 + 54513 0.7 0.968355
Target:  5'- ---cGACGCgugaucGAAGUGAucaucgAcgGCGAGCg -3'
miRNA:   3'- gaaaCUGCGa-----CUUCACU------UuaCGCUUG- -5'
18792 5' -45 NC_004683.1 + 19111 0.72 0.94174
Target:  5'- gCUggGAUGCgcgcGGGUGGAGUGCGAcgGCa -3'
miRNA:   3'- -GAaaCUGCGac--UUCACUUUACGCU--UG- -5'
18792 5' -45 NC_004683.1 + 22193 1.12 0.008017
Target:  5'- cCUUUGACGCUGAAGUGAAAUGCGAACu -3'
miRNA:   3'- -GAAACUGCGACUUCACUUUACGCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.