miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18793 3' -54.7 NC_004683.1 + 43819 0.66 0.743508
Target:  5'- uUGCGCGACuUGcggaucucgguuUGCACgaUCCgcgcgaugcggucggGGUCCa -3'
miRNA:   3'- -ACGCGUUG-AC------------ACGUGgaAGGa--------------CCAGG- -5'
18793 3' -54.7 NC_004683.1 + 52341 0.66 0.739286
Target:  5'- gGCGUcgAGCUcGUGCGCCUUggugccgcgccggcCCgGGUCg -3'
miRNA:   3'- aCGCG--UUGA-CACGUGGAA--------------GGaCCAGg -5'
18793 3' -54.7 NC_004683.1 + 25533 0.67 0.677579
Target:  5'- cGUGCcGCUGUG-GCUcggCCUGGUCg -3'
miRNA:   3'- aCGCGuUGACACgUGGaa-GGACCAGg -5'
18793 3' -54.7 NC_004683.1 + 45125 0.67 0.655481
Target:  5'- aGCGcCAGCgUGUGCACCU---UGG-CCa -3'
miRNA:   3'- aCGC-GUUG-ACACGUGGAaggACCaGG- -5'
18793 3' -54.7 NC_004683.1 + 21407 0.68 0.622196
Target:  5'- cGCGguGCUauccGCGCCcagUCCgaGGUCCg -3'
miRNA:   3'- aCGCguUGAca--CGUGGa--AGGa-CCAGG- -5'
18793 3' -54.7 NC_004683.1 + 20055 0.68 0.600032
Target:  5'- gGCGCggUUGgGCACCgaCgaGGUUCg -3'
miRNA:   3'- aCGCGuuGACaCGUGGaaGgaCCAGG- -5'
18793 3' -54.7 NC_004683.1 + 30852 0.68 0.588988
Target:  5'- gUGCGCAGCcgacgGUGCGCCggugcGGUCg -3'
miRNA:   3'- -ACGCGUUGa----CACGUGGaaggaCCAGg -5'
18793 3' -54.7 NC_004683.1 + 25831 0.69 0.576881
Target:  5'- cGUGCAGucucugcCUGUGCGCCa-CCUgGGUUCg -3'
miRNA:   3'- aCGCGUU-------GACACGUGGaaGGA-CCAGG- -5'
18793 3' -54.7 NC_004683.1 + 7958 0.69 0.567018
Target:  5'- cUGCGCGAUgcccUGCGCCUUggucggggugUCgGGUCCg -3'
miRNA:   3'- -ACGCGUUGac--ACGUGGAA----------GGaCCAGG- -5'
18793 3' -54.7 NC_004683.1 + 22481 0.72 0.412764
Target:  5'- aGcCGgAACUGUGCGCCgUUCUcGUCCg -3'
miRNA:   3'- aC-GCgUUGACACGUGGaAGGAcCAGG- -5'
18793 3' -54.7 NC_004683.1 + 22580 1.12 0.000676
Target:  5'- uUGCGCAACUGUGCACCUUCCUGGUCCu -3'
miRNA:   3'- -ACGCGUUGACACGUGGAAGGACCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.