Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18793 | 3' | -54.7 | NC_004683.1 | + | 43819 | 0.66 | 0.743508 |
Target: 5'- uUGCGCGACuUGcggaucucgguuUGCACgaUCCgcgcgaugcggucggGGUCCa -3' miRNA: 3'- -ACGCGUUG-AC------------ACGUGgaAGGa--------------CCAGG- -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 52341 | 0.66 | 0.739286 |
Target: 5'- gGCGUcgAGCUcGUGCGCCUUggugccgcgccggcCCgGGUCg -3' miRNA: 3'- aCGCG--UUGA-CACGUGGAA--------------GGaCCAGg -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 25533 | 0.67 | 0.677579 |
Target: 5'- cGUGCcGCUGUG-GCUcggCCUGGUCg -3' miRNA: 3'- aCGCGuUGACACgUGGaa-GGACCAGg -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 45125 | 0.67 | 0.655481 |
Target: 5'- aGCGcCAGCgUGUGCACCU---UGG-CCa -3' miRNA: 3'- aCGC-GUUG-ACACGUGGAaggACCaGG- -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 21407 | 0.68 | 0.622196 |
Target: 5'- cGCGguGCUauccGCGCCcagUCCgaGGUCCg -3' miRNA: 3'- aCGCguUGAca--CGUGGa--AGGa-CCAGG- -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 20055 | 0.68 | 0.600032 |
Target: 5'- gGCGCggUUGgGCACCgaCgaGGUUCg -3' miRNA: 3'- aCGCGuuGACaCGUGGaaGgaCCAGG- -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 30852 | 0.68 | 0.588988 |
Target: 5'- gUGCGCAGCcgacgGUGCGCCggugcGGUCg -3' miRNA: 3'- -ACGCGUUGa----CACGUGGaaggaCCAGg -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 25831 | 0.69 | 0.576881 |
Target: 5'- cGUGCAGucucugcCUGUGCGCCa-CCUgGGUUCg -3' miRNA: 3'- aCGCGUU-------GACACGUGGaaGGA-CCAGG- -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 7958 | 0.69 | 0.567018 |
Target: 5'- cUGCGCGAUgcccUGCGCCUUggucggggugUCgGGUCCg -3' miRNA: 3'- -ACGCGUUGac--ACGUGGAA----------GGaCCAGG- -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 22481 | 0.72 | 0.412764 |
Target: 5'- aGcCGgAACUGUGCGCCgUUCUcGUCCg -3' miRNA: 3'- aC-GCgUUGACACGUGGaAGGAcCAGG- -5' |
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18793 | 3' | -54.7 | NC_004683.1 | + | 22580 | 1.12 | 0.000676 |
Target: 5'- uUGCGCAACUGUGCACCUUCCUGGUCCu -3' miRNA: 3'- -ACGCGUUGACACGUGGAAGGACCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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