miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18793 5' -54 NC_004683.1 + 18531 0.66 0.780267
Target:  5'- -gGGAgCGGGucGGUcacGGCAGCGGCAc -3'
miRNA:   3'- caUCUaGCCCucCCAc--UUGUCGCUGU- -5'
18793 5' -54 NC_004683.1 + 48557 0.67 0.706662
Target:  5'- ---cGUCGGGcugcacuGGGUGAucguCGGCGGCGa -3'
miRNA:   3'- caucUAGCCCu------CCCACUu---GUCGCUGU- -5'
18793 5' -54 NC_004683.1 + 56957 0.68 0.684786
Target:  5'- gGUGGGUCGGcGuc-GUGAcCAGCGACGa -3'
miRNA:   3'- -CAUCUAGCC-CuccCACUuGUCGCUGU- -5'
18793 5' -54 NC_004683.1 + 18590 0.68 0.684786
Target:  5'- aUGGAacgUCGGGAaGGuUGuGCAGCGACu -3'
miRNA:   3'- cAUCU---AGCCCUcCC-ACuUGUCGCUGu -5'
18793 5' -54 NC_004683.1 + 19098 0.69 0.594988
Target:  5'- cUGGAUCuaccccgcuGGGAugcgcgcGGGUGGAguGCGACGg -3'
miRNA:   3'- cAUCUAG---------CCCU-------CCCACUUguCGCUGU- -5'
18793 5' -54 NC_004683.1 + 1325 0.69 0.585046
Target:  5'- -gGGAguacCuGGAGGGUGAGC-GCGACu -3'
miRNA:   3'- caUCUa---GcCCUCCCACUUGuCGCUGu -5'
18793 5' -54 NC_004683.1 + 50421 0.7 0.552175
Target:  5'- -cAGcUCGGcGcGGGUGAACAGCaGGCGg -3'
miRNA:   3'- caUCuAGCC-CuCCCACUUGUCG-CUGU- -5'
18793 5' -54 NC_004683.1 + 21416 0.71 0.498773
Target:  5'- --cGAUCGGGAuGGUcaccGACAGCGGCGc -3'
miRNA:   3'- cauCUAGCCCUcCCAc---UUGUCGCUGU- -5'
18793 5' -54 NC_004683.1 + 12062 0.71 0.488361
Target:  5'- --uGAUCGGGcgacagccccGGuGUGGGCAGCGGCGg -3'
miRNA:   3'- cauCUAGCCCu---------CC-CACUUGUCGCUGU- -5'
18793 5' -54 NC_004683.1 + 42588 0.72 0.451769
Target:  5'- cGgcGGUCGGGgccggucguccggcuGGGGUGGuCGGCGACc -3'
miRNA:   3'- -CauCUAGCCC---------------UCCCACUuGUCGCUGu -5'
18793 5' -54 NC_004683.1 + 17458 0.75 0.277096
Target:  5'- -cGGAUCGGGcaccGGGUaGAuCAGCGACAu -3'
miRNA:   3'- caUCUAGCCCu---CCCA-CUuGUCGCUGU- -5'
18793 5' -54 NC_004683.1 + 22543 1.08 0.001589
Target:  5'- gGUAGAUCGGGAGGGUGAACAGCGACAc -3'
miRNA:   3'- -CAUCUAGCCCUCCCACUUGUCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.