miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18794 5' -61.6 NC_004683.1 + 18007 0.66 0.459495
Target:  5'- -aCUGcAUGGUGCCGUCcuGGCCggguggGCCACu -3'
miRNA:   3'- cgGGC-UGCUACGGCAG--CCGG------CGGUGc -5'
18794 5' -61.6 NC_004683.1 + 47667 0.66 0.459495
Target:  5'- gGCCCGaACGccGCCacgCaGCCGUCGCa -3'
miRNA:   3'- -CGGGC-UGCuaCGGca-GcCGGCGGUGc -5'
18794 5' -61.6 NC_004683.1 + 41294 0.66 0.459495
Target:  5'- uGCuuGGCGgcGUCcUCGGCggccuuCGCCGCGu -3'
miRNA:   3'- -CGggCUGCuaCGGcAGCCG------GCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 25695 0.66 0.459495
Target:  5'- cCCUGGCaguGGUGCaucugCGUCGGCCugcugcugcucGCCGCGu -3'
miRNA:   3'- cGGGCUG---CUACG-----GCAGCCGG-----------CGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 10642 0.66 0.459495
Target:  5'- aGCCugagCGACGAUGCgGUCguuacuGGCCccuucGUCACGc -3'
miRNA:   3'- -CGG----GCUGCUACGgCAG------CCGG-----CGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 49324 0.66 0.459495
Target:  5'- cCCCGACugcgcGCUGUgCGGCUGCC-CGc -3'
miRNA:   3'- cGGGCUGcua--CGGCA-GCCGGCGGuGC- -5'
18794 5' -61.6 NC_004683.1 + 48427 0.66 0.450153
Target:  5'- aCCUGACGccGUgGaUCGGCUGuCCACa -3'
miRNA:   3'- cGGGCUGCuaCGgC-AGCCGGC-GGUGc -5'
18794 5' -61.6 NC_004683.1 + 3585 0.66 0.450153
Target:  5'- cGCCCGGCG-UGUccgCGUCGG-CGUCgaGCGa -3'
miRNA:   3'- -CGGGCUGCuACG---GCAGCCgGCGG--UGC- -5'
18794 5' -61.6 NC_004683.1 + 44801 0.66 0.440918
Target:  5'- gGCCuCGGCGuaGUGguaCGUCGGCgGgCGCGu -3'
miRNA:   3'- -CGG-GCUGC--UACg--GCAGCCGgCgGUGC- -5'
18794 5' -61.6 NC_004683.1 + 24920 0.66 0.440918
Target:  5'- aCUgGAUGAcGCCGUUGaGCCgGUCGCGg -3'
miRNA:   3'- cGGgCUGCUaCGGCAGC-CGG-CGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 31521 0.66 0.440918
Target:  5'- aGgCCGAC-AUGgUGUCGGCgucgGCCACGc -3'
miRNA:   3'- -CgGGCUGcUACgGCAGCCGg---CGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 13077 0.66 0.440918
Target:  5'- cGCCCGGCagGAaGCCGcgcUCGcGCaGCCACu -3'
miRNA:   3'- -CGGGCUG--CUaCGGC---AGC-CGgCGGUGc -5'
18794 5' -61.6 NC_004683.1 + 48094 0.66 0.438168
Target:  5'- uGCCCGACGcguacauagccaagGUguucGCCGUCauGGCgcucgCGCCACa -3'
miRNA:   3'- -CGGGCUGC--------------UA----CGGCAG--CCG-----GCGGUGc -5'
18794 5' -61.6 NC_004683.1 + 53637 0.66 0.43179
Target:  5'- gGCCCGccGCGAccugGCCG-CGGCUgagGCUGCa -3'
miRNA:   3'- -CGGGC--UGCUa---CGGCaGCCGG---CGGUGc -5'
18794 5' -61.6 NC_004683.1 + 42605 0.66 0.43179
Target:  5'- cGUCCGGCuGggGUgGUCGGCgacCGCgACGa -3'
miRNA:   3'- -CGGGCUG-CuaCGgCAGCCG---GCGgUGC- -5'
18794 5' -61.6 NC_004683.1 + 12773 0.66 0.43179
Target:  5'- -gCCGAgGAUGCCGU-GcCCGCCuCGg -3'
miRNA:   3'- cgGGCUgCUACGGCAgCcGGCGGuGC- -5'
18794 5' -61.6 NC_004683.1 + 30845 0.66 0.43179
Target:  5'- -gCCGACGGUgcGCCGgugCGGUCGacaGCGg -3'
miRNA:   3'- cgGGCUGCUA--CGGCa--GCCGGCgg-UGC- -5'
18794 5' -61.6 NC_004683.1 + 16222 0.66 0.43179
Target:  5'- aCCUGACGAuucUGCCGUCGugguucCUGCCGa- -3'
miRNA:   3'- cGGGCUGCU---ACGGCAGCc-----GGCGGUgc -5'
18794 5' -61.6 NC_004683.1 + 25525 0.66 0.428171
Target:  5'- -gCUGACGccGUGCCGcuguggcUCGGCCuggucgccgcccugGCCGCGg -3'
miRNA:   3'- cgGGCUGC--UACGGC-------AGCCGG--------------CGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 43502 0.66 0.413873
Target:  5'- uGCCCGAUuccAUGCaGUCGGCguagagccggauCGCCugGc -3'
miRNA:   3'- -CGGGCUGc--UACGgCAGCCG------------GCGGugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.