miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18794 5' -61.6 NC_004683.1 + 24002 1.09 0.000336
Target:  5'- gGCCCGACGAUGCCGUCGGCCGCCACGc -3'
miRNA:   3'- -CGGGCUGCUACGGCAGCCGGCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 21941 0.83 0.027149
Target:  5'- cGCCCGGCGGUGgCGggCGGCCGCCGa- -3'
miRNA:   3'- -CGGGCUGCUACgGCa-GCCGGCGGUgc -5'
18794 5' -61.6 NC_004683.1 + 24212 0.76 0.095996
Target:  5'- cGCCuCGACGAcguacuUGCCG-CGGCUGCCGuCGu -3'
miRNA:   3'- -CGG-GCUGCU------ACGGCaGCCGGCGGU-GC- -5'
18794 5' -61.6 NC_004683.1 + 20501 0.76 0.095996
Target:  5'- uGCaCCGcCGGUgccGCCGUUGGCCGCCcCGg -3'
miRNA:   3'- -CG-GGCuGCUA---CGGCAGCCGGCGGuGC- -5'
18794 5' -61.6 NC_004683.1 + 46021 0.75 0.104027
Target:  5'- uGCCCGACGcggcgGCCGagCGGUcccgCGCCACGa -3'
miRNA:   3'- -CGGGCUGCua---CGGCa-GCCG----GCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 40384 0.75 0.109729
Target:  5'- cGCCgCGGCGAUGCCcUCGGCgaUGCCAgCGc -3'
miRNA:   3'- -CGG-GCUGCUACGGcAGCCG--GCGGU-GC- -5'
18794 5' -61.6 NC_004683.1 + 2833 0.75 0.109729
Target:  5'- -gCCGcCGAgcucGCCG-CGGCCGCCGCGc -3'
miRNA:   3'- cgGGCuGCUa---CGGCaGCCGGCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 40869 0.75 0.118832
Target:  5'- cGCCguCGGCGA-GCgCGUCGGUCGCgGCGg -3'
miRNA:   3'- -CGG--GCUGCUaCG-GCAGCCGGCGgUGC- -5'
18794 5' -61.6 NC_004683.1 + 24683 0.75 0.119148
Target:  5'- cCCCGACGucaucgaggccaugGCCG-CGcGCCGCCGCGa -3'
miRNA:   3'- cGGGCUGCua------------CGGCaGC-CGGCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 25113 0.75 0.12202
Target:  5'- aCCCGGCGGcguUGCCGguccUGGCCGCCGu- -3'
miRNA:   3'- cGGGCUGCU---ACGGCa---GCCGGCGGUgc -5'
18794 5' -61.6 NC_004683.1 + 53662 0.75 0.12202
Target:  5'- cGgCCGGCGGUGCgGcCGGCgucUGCCGCGg -3'
miRNA:   3'- -CgGGCUGCUACGgCaGCCG---GCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 30770 0.74 0.125287
Target:  5'- cGCaCCGGCGca-CCGUCGGCUGCgCACGc -3'
miRNA:   3'- -CG-GGCUGCuacGGCAGCCGGCG-GUGC- -5'
18794 5' -61.6 NC_004683.1 + 26426 0.74 0.125287
Target:  5'- uGCCCGcCGGUGCCGccgagUUGGCCGCagugCACa -3'
miRNA:   3'- -CGGGCuGCUACGGC-----AGCCGGCG----GUGc -5'
18794 5' -61.6 NC_004683.1 + 10045 0.74 0.142869
Target:  5'- -gCCGcCGA-GCCGuUCGGCCGCgGCGg -3'
miRNA:   3'- cgGGCuGCUaCGGC-AGCCGGCGgUGC- -5'
18794 5' -61.6 NC_004683.1 + 5030 0.74 0.142869
Target:  5'- gGCCuCGACGcgcaugcGCCGcUGGCCGCCGCu -3'
miRNA:   3'- -CGG-GCUGCua-----CGGCaGCCGGCGGUGc -5'
18794 5' -61.6 NC_004683.1 + 8628 0.73 0.146646
Target:  5'- cGCCaCGGCGAUcagGCCGgugCGGUgGCCGCc -3'
miRNA:   3'- -CGG-GCUGCUA---CGGCa--GCCGgCGGUGc -5'
18794 5' -61.6 NC_004683.1 + 28023 0.73 0.154474
Target:  5'- cGCCCGGCGAgGCaGg-GGCCGUCACa -3'
miRNA:   3'- -CGGGCUGCUaCGgCagCCGGCGGUGc -5'
18794 5' -61.6 NC_004683.1 + 23807 0.73 0.166927
Target:  5'- gGCgCCGGggUGGUGCCGcCGccgguGCCGCCGCGg -3'
miRNA:   3'- -CG-GGCU--GCUACGGCaGC-----CGGCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 44372 0.73 0.166927
Target:  5'- uGCCCgGGCGAUcGUCGgcgCGGaUCGCCGCGu -3'
miRNA:   3'- -CGGG-CUGCUA-CGGCa--GCC-GGCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 7019 0.72 0.180274
Target:  5'- cGCCCG-Cc--GCCaGUCGGCCGCCuCGg -3'
miRNA:   3'- -CGGGCuGcuaCGG-CAGCCGGCGGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.