miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18794 5' -61.6 NC_004683.1 + 235 0.69 0.281443
Target:  5'- aGCgCCG-CGAUGCCGcCGcuGCUGcCCGCGg -3'
miRNA:   3'- -CG-GGCuGCUACGGCaGC--CGGC-GGUGC- -5'
18794 5' -61.6 NC_004683.1 + 6654 0.7 0.24345
Target:  5'- uGCCauCGACGccGUGCUGgccgCGGCgCGCCGCu -3'
miRNA:   3'- -CGG--GCUGC--UACGGCa---GCCG-GCGGUGc -5'
18794 5' -61.6 NC_004683.1 + 25216 0.7 0.24345
Target:  5'- cGCCCuGAuCGAgcUGCUGUCGGUgCGCgGCGu -3'
miRNA:   3'- -CGGG-CU-GCU--ACGGCAGCCG-GCGgUGC- -5'
18794 5' -61.6 NC_004683.1 + 56493 0.7 0.24345
Target:  5'- uCCCGACGcAUGCC--CGGCCGCacCGCa -3'
miRNA:   3'- cGGGCUGC-UACGGcaGCCGGCG--GUGc -5'
18794 5' -61.6 NC_004683.1 + 5238 0.7 0.255618
Target:  5'- uGCCUGGCGAcGUCGUCGccggcguaccuGCgCGCCugGu -3'
miRNA:   3'- -CGGGCUGCUaCGGCAGC-----------CG-GCGGugC- -5'
18794 5' -61.6 NC_004683.1 + 1073 0.69 0.274798
Target:  5'- uGCCUGACccgcaguugcuGAUugGCuCGUCGGCaUGCCACGc -3'
miRNA:   3'- -CGGGCUG-----------CUA--CG-GCAGCCG-GCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 28659 0.69 0.274798
Target:  5'- cGCUCGGCG-UGCCGUCuccuaccgcggaGGCCuGCCcaGCGc -3'
miRNA:   3'- -CGGGCUGCuACGGCAG------------CCGG-CGG--UGC- -5'
18794 5' -61.6 NC_004683.1 + 49274 0.69 0.274798
Target:  5'- uGCCCGACGAcGUCG-CGGCa--CACGu -3'
miRNA:   3'- -CGGGCUGCUaCGGCaGCCGgcgGUGC- -5'
18794 5' -61.6 NC_004683.1 + 40946 0.69 0.274798
Target:  5'- cGCgCCGcCGuUGcCCGUCGGCCacgccgaccugGCCGCGc -3'
miRNA:   3'- -CG-GGCuGCuAC-GGCAGCCGG-----------CGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 46597 0.7 0.237549
Target:  5'- uGCCgGuCGAggGCCGcgacggcaaGGCCGCCGCGc -3'
miRNA:   3'- -CGGgCuGCUa-CGGCag-------CCGGCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 1678 0.7 0.231768
Target:  5'- gGCCuCGACGAUcGCagcgCGGCCGgCGCGc -3'
miRNA:   3'- -CGG-GCUGCUA-CGgca-GCCGGCgGUGC- -5'
18794 5' -61.6 NC_004683.1 + 52206 0.71 0.226106
Target:  5'- cGCUCGAUGAgGCCGUCgucggucgGGuCCGCCuCGg -3'
miRNA:   3'- -CGGGCUGCUaCGGCAG--------CC-GGCGGuGC- -5'
18794 5' -61.6 NC_004683.1 + 46021 0.75 0.104027
Target:  5'- uGCCCGACGcggcgGCCGagCGGUcccgCGCCACGa -3'
miRNA:   3'- -CGGGCUGCua---CGGCa-GCCG----GCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 24683 0.75 0.119148
Target:  5'- cCCCGACGucaucgaggccaugGCCG-CGcGCCGCCGCGa -3'
miRNA:   3'- cGGGCUGCua------------CGGCaGC-CGGCGGUGC- -5'
18794 5' -61.6 NC_004683.1 + 25113 0.75 0.12202
Target:  5'- aCCCGGCGGcguUGCCGguccUGGCCGCCGu- -3'
miRNA:   3'- cGGGCUGCU---ACGGCa---GCCGGCGGUgc -5'
18794 5' -61.6 NC_004683.1 + 26426 0.74 0.125287
Target:  5'- uGCCCGcCGGUGCCGccgagUUGGCCGCagugCACa -3'
miRNA:   3'- -CGGGCuGCUACGGC-----AGCCGGCG----GUGc -5'
18794 5' -61.6 NC_004683.1 + 30770 0.74 0.125287
Target:  5'- cGCaCCGGCGca-CCGUCGGCUGCgCACGc -3'
miRNA:   3'- -CG-GGCUGCuacGGCAGCCGGCG-GUGC- -5'
18794 5' -61.6 NC_004683.1 + 10045 0.74 0.142869
Target:  5'- -gCCGcCGA-GCCGuUCGGCCGCgGCGg -3'
miRNA:   3'- cgGGCuGCUaCGGC-AGCCGGCGgUGC- -5'
18794 5' -61.6 NC_004683.1 + 8961 0.71 0.220562
Target:  5'- uGCCCGGCGAgGCCGaCGGauuaGCCAg- -3'
miRNA:   3'- -CGGGCUGCUaCGGCaGCCgg--CGGUgc -5'
18794 5' -61.6 NC_004683.1 + 2741 0.71 0.226106
Target:  5'- -aCgGAUGGUGCgCGgCGGCCGCgGCGa -3'
miRNA:   3'- cgGgCUGCUACG-GCaGCCGGCGgUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.