miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18795 3' -61 NC_004683.1 + 56563 0.66 0.470858
Target:  5'- gGGCAuGCGUcgggaccuGCGGUUgAUGACGgucgGGCCa -3'
miRNA:   3'- -CCGUcCGCG--------CGCCAG-UACUGCg---CCGG- -5'
18795 3' -61 NC_004683.1 + 12097 0.66 0.461298
Target:  5'- cGCGGGCGCGCuGGcccgCGUcGAUacCGGCUa -3'
miRNA:   3'- cCGUCCGCGCG-CCa---GUA-CUGc-GCCGG- -5'
18795 3' -61 NC_004683.1 + 56081 0.66 0.461298
Target:  5'- cGGC-GGCG-GUGGUgGUGGCGaGGUg -3'
miRNA:   3'- -CCGuCCGCgCGCCAgUACUGCgCCGg -5'
18795 3' -61 NC_004683.1 + 26805 0.66 0.461298
Target:  5'- cGCAGaCGgGUGGUCGguGCGCGauGCCg -3'
miRNA:   3'- cCGUCcGCgCGCCAGUacUGCGC--CGG- -5'
18795 3' -61 NC_004683.1 + 12721 0.66 0.461298
Target:  5'- aGCGGGCccaGCaGCGG-CGc--CGCGGCCa -3'
miRNA:   3'- cCGUCCG---CG-CGCCaGUacuGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 4641 0.66 0.461298
Target:  5'- cGGCcuGCGUGCcaucGG-CAUGggcaaGCGUGGCCc -3'
miRNA:   3'- -CCGucCGCGCG----CCaGUAC-----UGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 50495 0.66 0.461298
Target:  5'- aGCGGauCGCGuCGGuuUCAUGggacGCGCGGCUg -3'
miRNA:   3'- cCGUCc-GCGC-GCC--AGUAC----UGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 21603 0.66 0.461298
Target:  5'- ---cGGCGCGUGGg-GUGAgGgCGGCUg -3'
miRNA:   3'- ccguCCGCGCGCCagUACUgC-GCCGG- -5'
18795 3' -61 NC_004683.1 + 12146 0.66 0.451842
Target:  5'- aGGUGGGCG-GCaGGggGUGGCGgggGGCCa -3'
miRNA:   3'- -CCGUCCGCgCG-CCagUACUGCg--CCGG- -5'
18795 3' -61 NC_004683.1 + 12021 0.66 0.451842
Target:  5'- cGCGGGCcagcgcgcccGCGCGGggcuaccgCcgGAgGCuGGCCc -3'
miRNA:   3'- cCGUCCG----------CGCGCCa-------GuaCUgCG-CCGG- -5'
18795 3' -61 NC_004683.1 + 2753 0.66 0.451842
Target:  5'- cGGC-GGC-CGCGG-CGagcucGGCgGCGGCCa -3'
miRNA:   3'- -CCGuCCGcGCGCCaGUa----CUG-CGCCGG- -5'
18795 3' -61 NC_004683.1 + 2084 0.66 0.451842
Target:  5'- gGGCAGuGCucaccgcuaccGCuGCGGUgGUaGuCGUGGCCa -3'
miRNA:   3'- -CCGUC-CG-----------CG-CGCCAgUA-CuGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 17981 0.66 0.450902
Target:  5'- uGGCAGGCGCcaucccuGCGGUgA--ACGCcgacGGCg -3'
miRNA:   3'- -CCGUCCGCG-------CGCCAgUacUGCG----CCGg -5'
18795 3' -61 NC_004683.1 + 39241 0.66 0.450902
Target:  5'- cGGCcuuGGCGacgaGCGGUgCGUccuucucGAUGCgGGCCu -3'
miRNA:   3'- -CCGu--CCGCg---CGCCA-GUA-------CUGCG-CCGG- -5'
18795 3' -61 NC_004683.1 + 320 0.66 0.442493
Target:  5'- cGCGGGCaGCaGCGG-CGgcauCGCGGCg -3'
miRNA:   3'- cCGUCCG-CG-CGCCaGUacu-GCGCCGg -5'
18795 3' -61 NC_004683.1 + 51596 0.66 0.43971
Target:  5'- uGGauCAGGUcgccgaugccgaucGCGCGGUCGgugGGCGCGucguaguacGCCu -3'
miRNA:   3'- -CC--GUCCG--------------CGCGCCAGUa--CUGCGC---------CGG- -5'
18795 3' -61 NC_004683.1 + 5923 0.66 0.433254
Target:  5'- -cCAGGCGCcuugGCGGcgGUGccGCGCGGCg -3'
miRNA:   3'- ccGUCCGCG----CGCCagUAC--UGCGCCGg -5'
18795 3' -61 NC_004683.1 + 14721 0.66 0.433254
Target:  5'- -cCAGGa--GUGGUCGcugcccgagGGCGCGGCCa -3'
miRNA:   3'- ccGUCCgcgCGCCAGUa--------CUGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 42573 0.66 0.424128
Target:  5'- aGGCcgAGcGCGCcgcgGCGGUCggGGC-CGGUCg -3'
miRNA:   3'- -CCG--UC-CGCG----CGCCAGuaCUGcGCCGG- -5'
18795 3' -61 NC_004683.1 + 4535 0.66 0.424128
Target:  5'- cGGguGGauCGCuGCGcGUCGUcgGACuCGGCCg -3'
miRNA:   3'- -CCguCC--GCG-CGC-CAGUA--CUGcGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.