miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18795 3' -61 NC_004683.1 + 4535 0.66 0.424128
Target:  5'- cGGguGGauCGCuGCGcGUCGUcgGACuCGGCCg -3'
miRNA:   3'- -CCguCC--GCG-CGC-CAGUA--CUGcGCCGG- -5'
18795 3' -61 NC_004683.1 + 42573 0.66 0.424128
Target:  5'- aGGCcgAGcGCGCcgcgGCGGUCggGGC-CGGUCg -3'
miRNA:   3'- -CCG--UC-CGCG----CGCCAGuaCUGcGCCGG- -5'
18795 3' -61 NC_004683.1 + 13082 0.66 0.424128
Target:  5'- cGguGGCaCGCcauucaacuggGGUaGUGACGCGGCg -3'
miRNA:   3'- cCguCCGcGCG-----------CCAgUACUGCGCCGg -5'
18795 3' -61 NC_004683.1 + 44332 0.66 0.424128
Target:  5'- cGCAGGCGCucGCGcugccgucgaccGUCAaGcCGaCGGCCg -3'
miRNA:   3'- cCGUCCGCG--CGC------------CAGUaCuGC-GCCGG- -5'
18795 3' -61 NC_004683.1 + 45476 0.66 0.424128
Target:  5'- cGCuGGUugGCGGUCA-GGgGUGGCCg -3'
miRNA:   3'- cCGuCCGcgCGCCAGUaCUgCGCCGG- -5'
18795 3' -61 NC_004683.1 + 34094 0.67 0.418709
Target:  5'- cGGCAggacacaucgaugucGGCGUGCuGGUCGcGuaGCGUGcGCCa -3'
miRNA:   3'- -CCGU---------------CCGCGCG-CCAGUaC--UGCGC-CGG- -5'
18795 3' -61 NC_004683.1 + 47402 0.67 0.415119
Target:  5'- cGGaguGGUacuGCGCGGaugUCGcGGCGCGGCa -3'
miRNA:   3'- -CCgu-CCG---CGCGCC---AGUaCUGCGCCGg -5'
18795 3' -61 NC_004683.1 + 21697 0.67 0.415119
Target:  5'- gGGguGGUcgGUGCGG--GUGGCGCuGGCa -3'
miRNA:   3'- -CCguCCG--CGCGCCagUACUGCG-CCGg -5'
18795 3' -61 NC_004683.1 + 23812 0.67 0.406227
Target:  5'- gGGUcGGCGcCGgGGUgGUGcCGCcGCCg -3'
miRNA:   3'- -CCGuCCGC-GCgCCAgUACuGCGcCGG- -5'
18795 3' -61 NC_004683.1 + 39625 0.67 0.406227
Target:  5'- gGGUGGGCGcCGcCGGg-GUGGCGacccgagGGCCg -3'
miRNA:   3'- -CCGUCCGC-GC-GCCagUACUGCg------CCGG- -5'
18795 3' -61 NC_004683.1 + 55757 0.67 0.405345
Target:  5'- aGCAGcggacggucgcuGUGCGUGGUgAUGaauuccugcagauGCGUGGCCu -3'
miRNA:   3'- cCGUC------------CGCGCGCCAgUAC-------------UGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 40093 0.67 0.398328
Target:  5'- gGGCccaGCGCGCcuugacagaccagCcgGACGCGGCCg -3'
miRNA:   3'- -CCGuc-CGCGCGcca----------GuaCUGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 31616 0.67 0.397457
Target:  5'- cGuCGGGUGgGCGGUggaGUGAUcagcgcagcuuGCGGCCc -3'
miRNA:   3'- cC-GUCCGCgCGCCAg--UACUG-----------CGCCGG- -5'
18795 3' -61 NC_004683.1 + 13703 0.67 0.397457
Target:  5'- cGGCaAGGuCGCaucCGGUUucgccgGUG-CGCGGCCu -3'
miRNA:   3'- -CCG-UCC-GCGc--GCCAG------UACuGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 45006 0.67 0.397457
Target:  5'- cGGCAGGCGC-UGGcCAcuggUGAaccgucCGGCCg -3'
miRNA:   3'- -CCGUCCGCGcGCCaGU----ACUgc----GCCGG- -5'
18795 3' -61 NC_004683.1 + 4785 0.67 0.397457
Target:  5'- gGGUGGGgGCaucguccuuGUGGUCAUccGACGCGcCCa -3'
miRNA:   3'- -CCGUCCgCG---------CGCCAGUA--CUGCGCcGG- -5'
18795 3' -61 NC_004683.1 + 14305 0.67 0.397457
Target:  5'- cGGCAGuGC-UGCGGgu----CGCGGCCa -3'
miRNA:   3'- -CCGUC-CGcGCGCCaguacuGCGCCGG- -5'
18795 3' -61 NC_004683.1 + 56609 0.67 0.397457
Target:  5'- uGCAGGUccaucgGUGCGGUgcgccuaccugcCAUGcggUGCGGCCg -3'
miRNA:   3'- cCGUCCG------CGCGCCA------------GUACu--GCGCCGG- -5'
18795 3' -61 NC_004683.1 + 21255 0.67 0.388809
Target:  5'- uGGCA-GCGuCGuCGGUgccgacacCGUGGucCGCGGCCg -3'
miRNA:   3'- -CCGUcCGC-GC-GCCA--------GUACU--GCGCCGG- -5'
18795 3' -61 NC_004683.1 + 19157 0.67 0.388809
Target:  5'- -cCAGGCGCGCcGUCG-GugGCGucgugggugaGCCg -3'
miRNA:   3'- ccGUCCGCGCGcCAGUaCugCGC----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.