miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18795 5' -55.6 NC_004683.1 + 24447 0.66 0.74116
Target:  5'- cCGGUGAUCgcgaccgcgugGCCUgCGGCGACGagucgGCg- -3'
miRNA:   3'- aGCCGCUAG-----------CGGA-GCUGCUGCa----UGaa -5'
18795 5' -55.6 NC_004683.1 + 18293 0.66 0.74116
Target:  5'- -gGGCGAguugaGCCgggCGACGAUGU-CUa -3'
miRNA:   3'- agCCGCUag---CGGa--GCUGCUGCAuGAa -5'
18795 5' -55.6 NC_004683.1 + 41280 0.66 0.74116
Target:  5'- cUCGGCGGccuUCGCCgCGuCGGCGg---- -3'
miRNA:   3'- -AGCCGCU---AGCGGaGCuGCUGCaugaa -5'
18795 5' -55.6 NC_004683.1 + 2752 0.66 0.730723
Target:  5'- gCGGCGGcCGCggcgagCUCGGCGGCGgcCa- -3'
miRNA:   3'- aGCCGCUaGCG------GAGCUGCUGCauGaa -5'
18795 5' -55.6 NC_004683.1 + 21088 0.66 0.720189
Target:  5'- uUCGGUGcuGUCGCUgcgggacggUCGGCGACGgugACc- -3'
miRNA:   3'- -AGCCGC--UAGCGG---------AGCUGCUGCa--UGaa -5'
18795 5' -55.6 NC_004683.1 + 172 0.66 0.709569
Target:  5'- cUGGCcugGGUCucuuuGCCUCGaACGGCGUGCc- -3'
miRNA:   3'- aGCCG---CUAG-----CGGAGC-UGCUGCAUGaa -5'
18795 5' -55.6 NC_004683.1 + 56403 0.66 0.698874
Target:  5'- aCGGUGGUgugcauggCGUaggCGACGGCGUGCa- -3'
miRNA:   3'- aGCCGCUA--------GCGga-GCUGCUGCAUGaa -5'
18795 5' -55.6 NC_004683.1 + 5241 0.66 0.688116
Target:  5'- cUGGCGA-CGUCgUCGcCGGCGUACc- -3'
miRNA:   3'- aGCCGCUaGCGG-AGCuGCUGCAUGaa -5'
18795 5' -55.6 NC_004683.1 + 17998 0.67 0.677304
Target:  5'- gCGGUGAaCGCCgaCGGCGACGg---- -3'
miRNA:   3'- aGCCGCUaGCGGa-GCUGCUGCaugaa -5'
18795 5' -55.6 NC_004683.1 + 40565 0.67 0.677304
Target:  5'- cCGGCGcUCacccCCUCGGCGGUGUGCa- -3'
miRNA:   3'- aGCCGCuAGc---GGAGCUGCUGCAUGaa -5'
18795 5' -55.6 NC_004683.1 + 44916 0.67 0.677304
Target:  5'- aCGGCGAUUGCg-CGAgcugGGCGUGCa- -3'
miRNA:   3'- aGCCGCUAGCGgaGCUg---CUGCAUGaa -5'
18795 5' -55.6 NC_004683.1 + 40777 0.67 0.666451
Target:  5'- gCGGUGAcCGCCgCGAcCGACGcGCUc -3'
miRNA:   3'- aGCCGCUaGCGGaGCU-GCUGCaUGAa -5'
18795 5' -55.6 NC_004683.1 + 5851 0.67 0.666451
Target:  5'- cUCGGCGGUgacuggagCGaUCUCGGCGGCGgUGCc- -3'
miRNA:   3'- -AGCCGCUA--------GC-GGAGCUGCUGC-AUGaa -5'
18795 5' -55.6 NC_004683.1 + 27677 0.67 0.666451
Target:  5'- uUCGGgGAcCGCUUC-ACGAUGUACc- -3'
miRNA:   3'- -AGCCgCUaGCGGAGcUGCUGCAUGaa -5'
18795 5' -55.6 NC_004683.1 + 43006 0.67 0.666451
Target:  5'- gUC-GCGGUCGgCUucucCGACGGCGUACc- -3'
miRNA:   3'- -AGcCGCUAGCgGA----GCUGCUGCAUGaa -5'
18795 5' -55.6 NC_004683.1 + 40865 0.67 0.666451
Target:  5'- gUCGGCGAgCGCgUCGgucGCGGCGgucaccGCUUc -3'
miRNA:   3'- -AGCCGCUaGCGgAGC---UGCUGCa-----UGAA- -5'
18795 5' -55.6 NC_004683.1 + 34327 0.67 0.666451
Target:  5'- aUCGGUcuuuaggagcuuGAUgGCCUCGGCaucGCGUGCg- -3'
miRNA:   3'- -AGCCG------------CUAgCGGAGCUGc--UGCAUGaa -5'
18795 5' -55.6 NC_004683.1 + 39261 0.67 0.653385
Target:  5'- gUCGGCGuuggagugugccUCgGCCUUGGCGACGaGCg- -3'
miRNA:   3'- -AGCCGCu-----------AG-CGGAGCUGCUGCaUGaa -5'
18795 5' -55.6 NC_004683.1 + 40380 0.67 0.644659
Target:  5'- gCGGCGAUgC-CCUCGGCGAUGccaGCg- -3'
miRNA:   3'- aGCCGCUA-GcGGAGCUGCUGCa--UGaa -5'
18795 5' -55.6 NC_004683.1 + 52590 0.67 0.644659
Target:  5'- gUCGGCcgcGAUCGCCU--GC-ACGUGCUUg -3'
miRNA:   3'- -AGCCG---CUAGCGGAgcUGcUGCAUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.