miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18796 3' -58.6 NC_004683.1 + 23791 0.66 0.592766
Target:  5'- -cGCCGCCggugCCGCCGcgGCgGAAcGUCGAg -3'
miRNA:   3'- cuUGGCGGg---GGUGGC--UGgCUU-CAGCU- -5'
18796 3' -58.6 NC_004683.1 + 32073 0.66 0.592766
Target:  5'- -cACCGCCUCaGCCGcCCGcGGGUUGGu -3'
miRNA:   3'- cuUGGCGGGGgUGGCuGGC-UUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 26406 0.66 0.586413
Target:  5'- -cACCGCCcugaucccgcuggugCCCGCCGguGCCGccGAGUUGGc -3'
miRNA:   3'- cuUGGCGG---------------GGGUGGC--UGGC--UUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 8956 0.66 0.582185
Target:  5'- gGAGCUGCCCggcgagGCCGACgGAuuagccagccGGUCGAc -3'
miRNA:   3'- -CUUGGCGGGgg----UGGCUGgCU----------UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 25555 0.66 0.582185
Target:  5'- --gUCGCCgCC-CUGGCCGcGGUCGGc -3'
miRNA:   3'- cuuGGCGGgGGuGGCUGGCuUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 24648 0.66 0.582185
Target:  5'- uAGCCGCCgaugggguagCCgACCGGCUGGuGGUUGAu -3'
miRNA:   3'- cUUGGCGG----------GGgUGGCUGGCU-UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 51629 0.66 0.582185
Target:  5'- --cCCGCCCCCGagcCCGcggucgcgcuGCCGggGuUCGu -3'
miRNA:   3'- cuuGGCGGGGGU---GGC----------UGGCuuC-AGCu -5'
18796 3' -58.6 NC_004683.1 + 33006 0.66 0.581129
Target:  5'- -cGCCGCCCgauccccUCACCGAgagCGAGGUgGAg -3'
miRNA:   3'- cuUGGCGGG-------GGUGGCUg--GCUUCAgCU- -5'
18796 3' -58.6 NC_004683.1 + 50974 0.66 0.581129
Target:  5'- cGGCCGCaCCCGCCGccaaggcGCCGAGGg--- -3'
miRNA:   3'- cUUGGCGgGGGUGGC-------UGGCUUCagcu -5'
18796 3' -58.6 NC_004683.1 + 46454 0.66 0.571644
Target:  5'- gGAGCCGCUguUCCGuCCGGCCGccGAGaucaUCGAc -3'
miRNA:   3'- -CUUGGCGG--GGGU-GGCUGGC--UUC----AGCU- -5'
18796 3' -58.6 NC_004683.1 + 7557 0.66 0.561148
Target:  5'- cGAACUGgCCaaGCauauucgcaacuCGGCCGAGGUCGAc -3'
miRNA:   3'- -CUUGGCgGGggUG------------GCUGGCUUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 25754 0.66 0.561148
Target:  5'- cGGGCCGCUgCCgucgagcacGCUGGCCGAggAGUCu- -3'
miRNA:   3'- -CUUGGCGGgGG---------UGGCUGGCU--UCAGcu -5'
18796 3' -58.6 NC_004683.1 + 16693 0.66 0.561148
Target:  5'- uGGCUGCggaUCCC-CCGGCCGccacAGGUCGAc -3'
miRNA:   3'- cUUGGCG---GGGGuGGCUGGC----UUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 47066 0.66 0.561148
Target:  5'- -cACgGCCaCCCGaCGAUCGAcGUCGAg -3'
miRNA:   3'- cuUGgCGG-GGGUgGCUGGCUuCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 43452 0.66 0.55801
Target:  5'- -cGCCGCCCCUcuucgaucGCCucgucgucguacugGAUCGGAGUCa- -3'
miRNA:   3'- cuUGGCGGGGG--------UGG--------------CUGGCUUCAGcu -5'
18796 3' -58.6 NC_004683.1 + 44713 0.66 0.550707
Target:  5'- ---aCGCgCCCGCCGacguaccacuacGCCGAGGcCGAc -3'
miRNA:   3'- cuugGCGgGGGUGGC------------UGGCUUCaGCU- -5'
18796 3' -58.6 NC_004683.1 + 40416 0.66 0.540325
Target:  5'- -uGCCGCgCUCCACCGAgCCGcAGUgUGGg -3'
miRNA:   3'- cuUGGCG-GGGGUGGCU-GGCuUCA-GCU- -5'
18796 3' -58.6 NC_004683.1 + 31987 0.67 0.53001
Target:  5'- cAGCuCGCCCCgcuggcugCACCGGCCcGAGcCGAc -3'
miRNA:   3'- cUUG-GCGGGG--------GUGGCUGGcUUCaGCU- -5'
18796 3' -58.6 NC_004683.1 + 52050 0.67 0.528983
Target:  5'- gGAACCGUgCCCGacgcgccCUGGCUGAucGUCGAc -3'
miRNA:   3'- -CUUGGCGgGGGU-------GGCUGGCUu-CAGCU- -5'
18796 3' -58.6 NC_004683.1 + 21682 0.67 0.519769
Target:  5'- cAGCCGCCCUCACCccacgcGCCGAuggUGAu -3'
miRNA:   3'- cUUGGCGGGGGUGGc-----UGGCUucaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.