miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18796 3' -58.6 NC_004683.1 + 18124 0.67 0.517729
Target:  5'- aGGCUGCCcagugcauCCCGCCGACCuucuguggcaccAGGUCGAa -3'
miRNA:   3'- cUUGGCGG--------GGGUGGCUGGc-----------UUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 40781 0.67 0.499527
Target:  5'- uGACCGCCgcgaccgacgcgCUCGCCGACggCGAGGcCGAg -3'
miRNA:   3'- cUUGGCGG------------GGGUGGCUG--GCUUCaGCU- -5'
18796 3' -58.6 NC_004683.1 + 46566 0.67 0.499527
Target:  5'- -cGCUGCCCCaaCAgCGACC--AGUCGAu -3'
miRNA:   3'- cuUGGCGGGG--GUgGCUGGcuUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 7480 0.67 0.499527
Target:  5'- cAGCgCGCCCggCCGCCGAauCC-AGGUCGAg -3'
miRNA:   3'- cUUG-GCGGG--GGUGGCU--GGcUUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 26417 0.67 0.498524
Target:  5'- -cGCgGCCUCgCACCG-CCGAcagcgccGGUCGAu -3'
miRNA:   3'- cuUGgCGGGG-GUGGCuGGCU-------UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 21770 0.67 0.489537
Target:  5'- cGACCGCggCCACCGAUgGuuGGUCGGg -3'
miRNA:   3'- cUUGGCGggGGUGGCUGgCu-UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 35055 0.67 0.488544
Target:  5'- cGGACgGUCUCCACCGACCGugcuacagacagcAGGaccgCGAa -3'
miRNA:   3'- -CUUGgCGGGGGUGGCUGGC-------------UUCa---GCU- -5'
18796 3' -58.6 NC_004683.1 + 46103 0.67 0.487551
Target:  5'- gGGACCGCUCggCCGCCGcgucgggcagcacucGCCGAacagaucgggcugcgAGUCGAc -3'
miRNA:   3'- -CUUGGCGGG--GGUGGC---------------UGGCU---------------UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 44853 0.67 0.479642
Target:  5'- -cGCgGCCCgCCGCCG-CCG-GGUCGu -3'
miRNA:   3'- cuUGgCGGG-GGUGGCuGGCuUCAGCu -5'
18796 3' -58.6 NC_004683.1 + 20370 0.67 0.479642
Target:  5'- -cGCCGCCCCgGCCGgguuuggauGCUGAGGcCa- -3'
miRNA:   3'- cuUGGCGGGGgUGGC---------UGGCUUCaGcu -5'
18796 3' -58.6 NC_004683.1 + 51498 0.67 0.479642
Target:  5'- ---aCGCgCCCACCGACCGcg--CGAu -3'
miRNA:   3'- cuugGCGgGGGUGGCUGGCuucaGCU- -5'
18796 3' -58.6 NC_004683.1 + 4423 0.67 0.479642
Target:  5'- cGAAUCGCCCgCAguugaacacCCGGCCG-AGUCcGAc -3'
miRNA:   3'- -CUUGGCGGGgGU---------GGCUGGCuUCAG-CU- -5'
18796 3' -58.6 NC_004683.1 + 4031 0.68 0.469846
Target:  5'- -cGCCGCCCUCGggugCGAgcaCGggGUCGAc -3'
miRNA:   3'- cuUGGCGGGGGUg---GCUg--GCuuCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 7998 0.68 0.460153
Target:  5'- -uGCCGCCCUUgagugaACC-ACCGAAGUgCGAu -3'
miRNA:   3'- cuUGGCGGGGG------UGGcUGGCUUCA-GCU- -5'
18796 3' -58.6 NC_004683.1 + 49011 0.68 0.422486
Target:  5'- -cGCCGCCCUCAagcCCGACCGGgaAG-CGc -3'
miRNA:   3'- cuUGGCGGGGGU---GGCUGGCU--UCaGCu -5'
18796 3' -58.6 NC_004683.1 + 13439 0.69 0.413362
Target:  5'- -uGCCGCCgCCACCGgagACUGggGgcaggcUCGAg -3'
miRNA:   3'- cuUGGCGGgGGUGGC---UGGCuuC------AGCU- -5'
18796 3' -58.6 NC_004683.1 + 24673 0.69 0.413362
Target:  5'- cGggUCGCCuCCCAUgaGGCCGAGGUa-- -3'
miRNA:   3'- -CuuGGCGG-GGGUGg-CUGGCUUCAgcu -5'
18796 3' -58.6 NC_004683.1 + 7032 0.69 0.395484
Target:  5'- cGAGCUGCaCCaCCGCCcGCCGccAGUCGGc -3'
miRNA:   3'- -CUUGGCG-GG-GGUGGcUGGCu-UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 38574 0.69 0.394603
Target:  5'- cGAACCGgccgcauaagaaaCCCCCGCCGGaCGggG-CGGg -3'
miRNA:   3'- -CUUGGC-------------GGGGGUGGCUgGCuuCaGCU- -5'
18796 3' -58.6 NC_004683.1 + 38669 0.69 0.386734
Target:  5'- --cCCGCCCCguCCGGCgGggGUUu- -3'
miRNA:   3'- cuuGGCGGGGguGGCUGgCuuCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.