miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18796 3' -58.6 NC_004683.1 + 382 0.74 0.205659
Target:  5'- aGAACCGUCUCCAugcgcCCGGCCGcGGUCa- -3'
miRNA:   3'- -CUUGGCGGGGGU-----GGCUGGCuUCAGcu -5'
18796 3' -58.6 NC_004683.1 + 4031 0.68 0.469846
Target:  5'- -cGCCGCCCUCGggugCGAgcaCGggGUCGAc -3'
miRNA:   3'- cuUGGCGGGGGUg---GCUg--GCuuCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 4423 0.67 0.479642
Target:  5'- cGAAUCGCCCgCAguugaacacCCGGCCG-AGUCcGAc -3'
miRNA:   3'- -CUUGGCGGGgGU---------GGCUGGCuUCAG-CU- -5'
18796 3' -58.6 NC_004683.1 + 7032 0.69 0.395484
Target:  5'- cGAGCUGCaCCaCCGCCcGCCGccAGUCGGc -3'
miRNA:   3'- -CUUGGCG-GG-GGUGGcUGGCu-UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 7480 0.67 0.499527
Target:  5'- cAGCgCGCCCggCCGCCGAauCC-AGGUCGAg -3'
miRNA:   3'- cUUG-GCGGG--GGUGGCU--GGcUUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 7557 0.66 0.561148
Target:  5'- cGAACUGgCCaaGCauauucgcaacuCGGCCGAGGUCGAc -3'
miRNA:   3'- -CUUGGCgGGggUG------------GCUGGCUUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 7998 0.68 0.460153
Target:  5'- -uGCCGCCCUUgagugaACC-ACCGAAGUgCGAu -3'
miRNA:   3'- cuUGGCGGGGG------UGGcUGGCUUCA-GCU- -5'
18796 3' -58.6 NC_004683.1 + 8956 0.66 0.582185
Target:  5'- gGAGCUGCCCggcgagGCCGACgGAuuagccagccGGUCGAc -3'
miRNA:   3'- -CUUGGCGGGgg----UGGCUGgCU----------UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 11445 0.7 0.33698
Target:  5'- aGACCGCCCUCACCGcACUGGGuuUUGAc -3'
miRNA:   3'- cUUGGCGGGGGUGGC-UGGCUUc-AGCU- -5'
18796 3' -58.6 NC_004683.1 + 12942 0.72 0.258306
Target:  5'- cGGCCG-CCCCACCGgugGCCGGucucuGUCGAc -3'
miRNA:   3'- cUUGGCgGGGGUGGC---UGGCUu----CAGCU- -5'
18796 3' -58.6 NC_004683.1 + 13439 0.69 0.413362
Target:  5'- -uGCCGCCgCCACCGgagACUGggGgcaggcUCGAg -3'
miRNA:   3'- cuUGGCGGgGGUGGC---UGGCuuC------AGCU- -5'
18796 3' -58.6 NC_004683.1 + 16693 0.66 0.561148
Target:  5'- uGGCUGCggaUCCC-CCGGCCGccacAGGUCGAc -3'
miRNA:   3'- cUUGGCG---GGGGuGGCUGGC----UUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 17370 0.7 0.34494
Target:  5'- aGAACCGCCUgCGCUGACguguaaccgCGGGuGUCGAa -3'
miRNA:   3'- -CUUGGCGGGgGUGGCUG---------GCUU-CAGCU- -5'
18796 3' -58.6 NC_004683.1 + 18124 0.67 0.517729
Target:  5'- aGGCUGCCcagugcauCCCGCCGACCuucuguggcaccAGGUCGAa -3'
miRNA:   3'- cUUGGCGG--------GGGUGGCUGGc-----------UUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 18749 0.69 0.369621
Target:  5'- uGAGCUGCUgaaaCGCCGcACCGAGGUCGc -3'
miRNA:   3'- -CUUGGCGGgg--GUGGC-UGGCUUCAGCu -5'
18796 3' -58.6 NC_004683.1 + 18963 0.84 0.040826
Target:  5'- cGGGCCGCCUCCugCgGAUCGAAGUCGGg -3'
miRNA:   3'- -CUUGGCGGGGGugG-CUGGCUUCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 20370 0.67 0.479642
Target:  5'- -cGCCGCCCCgGCCGgguuuggauGCUGAGGcCa- -3'
miRNA:   3'- cuUGGCGGGGgUGGC---------UGGCUUCaGcu -5'
18796 3' -58.6 NC_004683.1 + 21682 0.67 0.519769
Target:  5'- cAGCCGCCCUCACCccacgcGCCGAuggUGAu -3'
miRNA:   3'- cUUGGCGGGGGUGGc-----UGGCUucaGCU- -5'
18796 3' -58.6 NC_004683.1 + 21770 0.67 0.489537
Target:  5'- cGACCGCggCCACCGAUgGuuGGUCGGg -3'
miRNA:   3'- cUUGGCGggGGUGGCUGgCu-UCAGCU- -5'
18796 3' -58.6 NC_004683.1 + 23791 0.66 0.592766
Target:  5'- -cGCCGCCggugCCGCCGcgGCgGAAcGUCGAg -3'
miRNA:   3'- cuUGGCGGg---GGUGGC--UGgCUU-CAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.