Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18797 | 5' | -52.4 | NC_004683.1 | + | 6880 | 0.66 | 0.863889 |
Target: 5'- -cGcuGGACggcgCGCgaCGGCGCGAUCGUCg -3' miRNA: 3'- caCucCUUGa---GUG--GCUGCGCUAGUAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 32860 | 0.66 | 0.879926 |
Target: 5'- -aGGGcGAGCUC-CC-ACGCGAUCGc- -3' miRNA: 3'- caCUC-CUUGAGuGGcUGCGCUAGUag -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 52651 | 0.66 | 0.837974 |
Target: 5'- -cGAGGAACgCGCCGaACGC-AUCGc- -3' miRNA: 3'- caCUCCUUGaGUGGC-UGCGcUAGUag -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 20195 | 0.66 | 0.863889 |
Target: 5'- --cAGGAACg-ACCGGCGgGGUCAccUCg -3' miRNA: 3'- cacUCCUUGagUGGCUGCgCUAGU--AG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 50671 | 0.66 | 0.837074 |
Target: 5'- -cGAGGGAacacgUCGCCGAcgaucaaCGCGAugUCGUCc -3' miRNA: 3'- caCUCCUUg----AGUGGCU-------GCGCU--AGUAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 16425 | 0.66 | 0.863889 |
Target: 5'- uUGAGGAACUCGuuGAUGCc------ -3' miRNA: 3'- cACUCCUUGAGUggCUGCGcuaguag -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 56183 | 0.66 | 0.846849 |
Target: 5'- -cGAGGAcgauggcccAUUCACUGGCGUGGUUg-- -3' miRNA: 3'- caCUCCU---------UGAGUGGCUGCGCUAGuag -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 33268 | 0.66 | 0.837974 |
Target: 5'- -cGAGGAaaaGCUgACgGugGUGAUCGa- -3' miRNA: 3'- caCUCCU---UGAgUGgCugCGCUAGUag -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 28955 | 0.67 | 0.809079 |
Target: 5'- -cGAGGAGCUCccacaacAUCGAUGCGGcUUAUUu -3' miRNA: 3'- caCUCCUUGAG-------UGGCUGCGCU-AGUAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 53660 | 0.67 | 0.800329 |
Target: 5'- cUGAGGcugcACUCACagaGGCGCGAcUCcgCg -3' miRNA: 3'- cACUCCu---UGAGUGg--CUGCGCU-AGuaG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 51601 | 0.67 | 0.800329 |
Target: 5'- cGUGAuGGAucaGgUCGCCGAUGcCGAUCGc- -3' miRNA: 3'- -CACU-CCU---UgAGUGGCUGC-GCUAGUag -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 53229 | 0.67 | 0.810041 |
Target: 5'- gGUGAGcGGugUCGggGGCGCGAaCGUCg -3' miRNA: 3'- -CACUC-CUugAGUggCUGCGCUaGUAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 3805 | 0.68 | 0.780366 |
Target: 5'- gGUGAGGccgucguuuGGCUCACCGuccuCGCcggCAUCg -3' miRNA: 3'- -CACUCC---------UUGAGUGGCu---GCGcuaGUAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 54080 | 0.68 | 0.77014 |
Target: 5'- gGUGuGGAGCgUCACCGGCGa-GUCGa- -3' miRNA: 3'- -CACuCCUUG-AGUGGCUGCgcUAGUag -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 10363 | 0.68 | 0.749257 |
Target: 5'- -aGaAGGcgUUCGCCGACGCGggCAa- -3' miRNA: 3'- caC-UCCuuGAGUGGCUGCGCuaGUag -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 1780 | 0.69 | 0.717036 |
Target: 5'- uUGAGGucaggcagcAGCgCGCCGGCcgcgcuGCGAUCGUCg -3' miRNA: 3'- cACUCC---------UUGaGUGGCUG------CGCUAGUAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 23078 | 0.69 | 0.717036 |
Target: 5'- ---uGGuGCUCACCGGCGCGcUC-UCg -3' miRNA: 3'- cacuCCuUGAGUGGCUGCGCuAGuAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 13955 | 0.69 | 0.684031 |
Target: 5'- -cGAGGugccGCgugaugucagCGCCGGCGCGGUCcUCg -3' miRNA: 3'- caCUCCu---UGa---------GUGGCUGCGCUAGuAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 13862 | 0.7 | 0.66175 |
Target: 5'- -cGAGGAcCgCGCCGGCGCuGA-CAUCa -3' miRNA: 3'- caCUCCUuGaGUGGCUGCG-CUaGUAG- -5' |
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18797 | 5' | -52.4 | NC_004683.1 | + | 6019 | 0.7 | 0.628141 |
Target: 5'- cUGGGaGGGCUCGCCGuuGCcGAUCGUg -3' miRNA: 3'- cACUC-CUUGAGUGGCugCG-CUAGUAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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