miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18798 3' -52.5 NC_004683.1 + 7742 0.66 0.885523
Target:  5'- aUGCGCaCuUCGUCgaguucgGCACCGGCGcAGa -3'
miRNA:   3'- gAUGCG-GcAGCAGa------UGUGGCUGU-UCa -5'
18798 3' -52.5 NC_004683.1 + 3802 0.66 0.885523
Target:  5'- -gAgGCCGUCGUUUGgcucaccguccuCGCCGGCAu-- -3'
miRNA:   3'- gaUgCGGCAGCAGAU------------GUGGCUGUuca -5'
18798 3' -52.5 NC_004683.1 + 12410 0.66 0.885523
Target:  5'- -gACGCUGUUG-C-GCGCCGACAGc- -3'
miRNA:   3'- gaUGCGGCAGCaGaUGUGGCUGUUca -5'
18798 3' -52.5 NC_004683.1 + 18074 0.66 0.885523
Target:  5'- --uCGCCGUCGgCguuCACCG-CAGGg -3'
miRNA:   3'- gauGCGGCAGCaGau-GUGGCuGUUCa -5'
18798 3' -52.5 NC_004683.1 + 44295 0.66 0.877888
Target:  5'- -cGCGCCGaCGaUCgcccggGCACCGACcuGUc -3'
miRNA:   3'- gaUGCGGCaGC-AGa-----UGUGGCUGuuCA- -5'
18798 3' -52.5 NC_004683.1 + 55864 0.66 0.875547
Target:  5'- gUACGCCGgccaacUCGUCUACgggcgcgcgucgccACCGuauuCAAGg -3'
miRNA:   3'- gAUGCGGC------AGCAGAUG--------------UGGCu---GUUCa -5'
18798 3' -52.5 NC_004683.1 + 48243 0.66 0.869994
Target:  5'- -cGCGCCGaaaugagCGaCgcCGCCGGCGAGUg -3'
miRNA:   3'- gaUGCGGCa------GCaGauGUGGCUGUUCA- -5'
18798 3' -52.5 NC_004683.1 + 22705 0.66 0.869994
Target:  5'- uCUACGCCGguucgacgcgCGUCgGCACCGuauCAGc- -3'
miRNA:   3'- -GAUGCGGCa---------GCAGaUGUGGCu--GUUca -5'
18798 3' -52.5 NC_004683.1 + 47476 0.66 0.861848
Target:  5'- -cGCGUCGUcaCGUgUGgGCCGugGAGg -3'
miRNA:   3'- gaUGCGGCA--GCAgAUgUGGCugUUCa -5'
18798 3' -52.5 NC_004683.1 + 56072 0.66 0.861848
Target:  5'- --cCGCCG-CGUCUgGCGCUGGCAc-- -3'
miRNA:   3'- gauGCGGCaGCAGA-UGUGGCUGUuca -5'
18798 3' -52.5 NC_004683.1 + 43106 0.66 0.853458
Target:  5'- -cGCGCUGUa--CUACACCGACcccGAGa -3'
miRNA:   3'- gaUGCGGCAgcaGAUGUGGCUG---UUCa -5'
18798 3' -52.5 NC_004683.1 + 52620 0.66 0.852605
Target:  5'- aCUGCggGCCGUgccagcaCGUgUuCACCGACGAGg -3'
miRNA:   3'- -GAUG--CGGCA-------GCAgAuGUGGCUGUUCa -5'
18798 3' -52.5 NC_004683.1 + 53597 0.67 0.84483
Target:  5'- --cCGCCGgccgCGUCUuCGCCGcCGAGc -3'
miRNA:   3'- gauGCGGCa---GCAGAuGUGGCuGUUCa -5'
18798 3' -52.5 NC_004683.1 + 54074 0.67 0.84483
Target:  5'- -aACGCCGguguggagCGUC---ACCGGCGAGUc -3'
miRNA:   3'- gaUGCGGCa-------GCAGaugUGGCUGUUCA- -5'
18798 3' -52.5 NC_004683.1 + 20330 0.67 0.8269
Target:  5'- -gACGCCGUUG-CUgaucGCGCCGAUAc-- -3'
miRNA:   3'- gaUGCGGCAGCaGA----UGUGGCUGUuca -5'
18798 3' -52.5 NC_004683.1 + 35049 0.67 0.817615
Target:  5'- uUGCGCCGgacgGUCUcCACCGACc--- -3'
miRNA:   3'- gAUGCGGCag--CAGAuGUGGCUGuuca -5'
18798 3' -52.5 NC_004683.1 + 42922 0.67 0.808132
Target:  5'- gUACGCCGUCGgagaaGCCGACc--- -3'
miRNA:   3'- gAUGCGGCAGCagaugUGGCUGuuca -5'
18798 3' -52.5 NC_004683.1 + 26690 0.68 0.79846
Target:  5'- aUACGCCccggugucacGUCGagUGCGCCGGCGGc- -3'
miRNA:   3'- gAUGCGG----------CAGCagAUGUGGCUGUUca -5'
18798 3' -52.5 NC_004683.1 + 50627 0.68 0.788611
Target:  5'- -cACGCCGUUGUCgucgACAUaCGACucGAGg -3'
miRNA:   3'- gaUGCGGCAGCAGa---UGUG-GCUG--UUCa -5'
18798 3' -52.5 NC_004683.1 + 14549 0.68 0.782621
Target:  5'- aCUACaCCGaagagggcgguggguUCaUCUACGCCGACGGGUc -3'
miRNA:   3'- -GAUGcGGC---------------AGcAGAUGUGGCUGUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.