miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18798 3' -52.5 NC_004683.1 + 29623 0.68 0.778595
Target:  5'- -gACGCCGUCGUUgucgACuuCGACGGa- -3'
miRNA:   3'- gaUGCGGCAGCAGa---UGugGCUGUUca -5'
18798 3' -52.5 NC_004683.1 + 18858 0.68 0.75811
Target:  5'- --uUGCCGUCGUUcaaGCUGGCGAGg -3'
miRNA:   3'- gauGCGGCAGCAGaugUGGCUGUUCa -5'
18798 3' -52.5 NC_004683.1 + 52789 0.69 0.737099
Target:  5'- -gGCGCUGcUCGcCgAgGCCGACGAGUa -3'
miRNA:   3'- gaUGCGGC-AGCaGaUgUGGCUGUUCA- -5'
18798 3' -52.5 NC_004683.1 + 5456 0.69 0.737099
Target:  5'- --cCGCCagGUCGUCgcCACCGGCGAuGUg -3'
miRNA:   3'- gauGCGG--CAGCAGauGUGGCUGUU-CA- -5'
18798 3' -52.5 NC_004683.1 + 23000 0.69 0.715656
Target:  5'- -gGCuGCCGUCGUUgaucaccagcgACACCGGCAGu- -3'
miRNA:   3'- gaUG-CGGCAGCAGa----------UGUGGCUGUUca -5'
18798 3' -52.5 NC_004683.1 + 3598 0.69 0.715656
Target:  5'- -cGCGUCGgCGUCgagcgaUACACCGACcAGUg -3'
miRNA:   3'- gaUGCGGCaGCAG------AUGUGGCUGuUCA- -5'
18798 3' -52.5 NC_004683.1 + 20737 0.69 0.693876
Target:  5'- cCUACGCCGaaUUGcUCgACACCGACAu-- -3'
miRNA:   3'- -GAUGCGGC--AGC-AGaUGUGGCUGUuca -5'
18798 3' -52.5 NC_004683.1 + 56316 0.7 0.671852
Target:  5'- -cACGCCGUCGcCUACGCCa------ -3'
miRNA:   3'- gaUGCGGCAGCaGAUGUGGcuguuca -5'
18798 3' -52.5 NC_004683.1 + 23373 0.72 0.55456
Target:  5'- cCUACGUCGagUCGcUCUacaacgcccgcggcgGCACCGACGAGg -3'
miRNA:   3'- -GAUGCGGC--AGC-AGA---------------UGUGGCUGUUCa -5'
18798 3' -52.5 NC_004683.1 + 5320 0.72 0.539374
Target:  5'- gUACGCCGgcgacgaCGUCgccagGCACUGACGGGc -3'
miRNA:   3'- gAUGCGGCa------GCAGa----UGUGGCUGUUCa -5'
18798 3' -52.5 NC_004683.1 + 26957 0.73 0.486441
Target:  5'- -gACGCCGUCGUCaGCAUCGAg---- -3'
miRNA:   3'- gaUGCGGCAGCAGaUGUGGCUguuca -5'
18798 3' -52.5 NC_004683.1 + 20055 0.74 0.455885
Target:  5'- -gGCGCgGUUGg--GCACCGACGAGg -3'
miRNA:   3'- gaUGCGgCAGCagaUGUGGCUGUUCa -5'
18798 3' -52.5 NC_004683.1 + 27257 1.07 0.002966
Target:  5'- gCUACGCCGUCGUCUACACCGACAAGUc -3'
miRNA:   3'- -GAUGCGGCAGCAGAUGUGGCUGUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.