miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18798 5' -53.1 NC_004683.1 + 15964 0.66 0.834708
Target:  5'- uGCAUUcgggcgagcuucucaGCGgccUCAgcggccuggccgaugUUGCCGUGCAGCAGu -3'
miRNA:   3'- -CGUGA---------------CGCa--AGU---------------GAUGGCACGUCGUC- -5'
18798 5' -53.1 NC_004683.1 + 23091 0.66 0.826451
Target:  5'- cGCGCUcucguggGCGUUCGCcAgCG-GCAGCGu -3'
miRNA:   3'- -CGUGA-------CGCAAGUGaUgGCaCGUCGUc -5'
18798 5' -53.1 NC_004683.1 + 22728 0.66 0.808464
Target:  5'- gGCACcguaucaGCGgaCACUACCugggGUGCAGCc- -3'
miRNA:   3'- -CGUGa------CGCaaGUGAUGG----CACGUCGuc -5'
18798 5' -53.1 NC_004683.1 + 28844 0.66 0.808464
Target:  5'- -gACUGCGcUUCACUgaGCCGUugGCA-CAGa -3'
miRNA:   3'- cgUGACGC-AAGUGA--UGGCA--CGUcGUC- -5'
18798 5' -53.1 NC_004683.1 + 48342 0.66 0.798713
Target:  5'- uCGCUGCGcagcCACUcGCCG-GCGGCGu -3'
miRNA:   3'- cGUGACGCaa--GUGA-UGGCaCGUCGUc -5'
18798 5' -53.1 NC_004683.1 + 52951 0.66 0.797728
Target:  5'- aGCGCUGCaggGUUCGCcgcuggaucuccaUGCCGaGCuugGGCAGa -3'
miRNA:   3'- -CGUGACG---CAAGUG-------------AUGGCaCG---UCGUC- -5'
18798 5' -53.1 NC_004683.1 + 18508 0.67 0.77868
Target:  5'- gGCACcGCGUUCAUguugaACCGg--GGCAGg -3'
miRNA:   3'- -CGUGaCGCAAGUGa----UGGCacgUCGUC- -5'
18798 5' -53.1 NC_004683.1 + 11515 0.67 0.758016
Target:  5'- cGCACgagcaGCGUUCGgcGCCGUGCuggaugcccuGGCAu -3'
miRNA:   3'- -CGUGa----CGCAAGUgaUGGCACG----------UCGUc -5'
18798 5' -53.1 NC_004683.1 + 52617 0.67 0.736817
Target:  5'- aGUACUGCGg-----GCCGUGcCAGCAc -3'
miRNA:   3'- -CGUGACGCaagugaUGGCAC-GUCGUc -5'
18798 5' -53.1 NC_004683.1 + 2085 0.68 0.704228
Target:  5'- gGCAgUGCucacCGCUACCGcUGCGGUGGu -3'
miRNA:   3'- -CGUgACGcaa-GUGAUGGC-ACGUCGUC- -5'
18798 5' -53.1 NC_004683.1 + 10709 0.68 0.693203
Target:  5'- cGgGCUGCGUgggUCACUGuCUGguaucggcGCGGCGGg -3'
miRNA:   3'- -CgUGACGCA---AGUGAU-GGCa-------CGUCGUC- -5'
18798 5' -53.1 NC_004683.1 + 25927 0.69 0.637388
Target:  5'- gGUACUacGCGUUCAUcACC-UGCAGCGc -3'
miRNA:   3'- -CGUGA--CGCAAGUGaUGGcACGUCGUc -5'
18798 5' -53.1 NC_004683.1 + 19313 0.71 0.515797
Target:  5'- cGCACcGCGUUCGac-CCG-GCGGCGGc -3'
miRNA:   3'- -CGUGaCGCAAGUgauGGCaCGUCGUC- -5'
18798 5' -53.1 NC_004683.1 + 11597 0.73 0.433458
Target:  5'- aGCACgGCGccgaaCGCUGCuCGUGCGGUGGg -3'
miRNA:   3'- -CGUGaCGCaa---GUGAUG-GCACGUCGUC- -5'
18798 5' -53.1 NC_004683.1 + 5485 0.73 0.414081
Target:  5'- gGCACgGCGUguccUCGgcgGCCGUGCAGUGGa -3'
miRNA:   3'- -CGUGaCGCA----AGUga-UGGCACGUCGUC- -5'
18798 5' -53.1 NC_004683.1 + 25273 0.73 0.404595
Target:  5'- cGCACUGCuGgccgCGCUGCCGgGCcuGCAGg -3'
miRNA:   3'- -CGUGACG-Caa--GUGAUGGCaCGu-CGUC- -5'
18798 5' -53.1 NC_004683.1 + 27219 1.11 0.001234
Target:  5'- cGCACUGCGUUCACUACCGUGCAGCAGc -3'
miRNA:   3'- -CGUGACGCAAGUGAUGGCACGUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.