miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18799 3' -60.3 NC_004683.1 + 49408 0.66 0.51086
Target:  5'- gCGGGCaGCCGCaCAgcgcgcAGUCggGGCgGUCa -3'
miRNA:   3'- -GCUCG-CGGCG-GU------UCAGagCCGgCAGc -5'
18799 3' -60.3 NC_004683.1 + 3819 0.66 0.51086
Target:  5'- cCGua-GCCGUCGAGggugaGGCCGUCGu -3'
miRNA:   3'- -GCucgCGGCGGUUCagag-CCGGCAGC- -5'
18799 3' -60.3 NC_004683.1 + 34989 0.66 0.500887
Target:  5'- cCGAGCGCCGCaaaCAAGcC-CGuGCCG-Ca -3'
miRNA:   3'- -GCUCGCGGCG---GUUCaGaGC-CGGCaGc -5'
18799 3' -60.3 NC_004683.1 + 25119 0.66 0.500887
Target:  5'- -cGGCGuuGCC-GGUCcUGGCCGcCGu -3'
miRNA:   3'- gcUCGCggCGGuUCAGaGCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 8181 0.66 0.500887
Target:  5'- -cGGUGCCaGCCucggGGUCgUCGGCgcCGUCGa -3'
miRNA:   3'- gcUCGCGG-CGGu---UCAG-AGCCG--GCAGC- -5'
18799 3' -60.3 NC_004683.1 + 6964 0.66 0.500887
Target:  5'- aCGAucGCGCCGUCGcgcgccGUCcagCGGCCGUa- -3'
miRNA:   3'- -GCU--CGCGGCGGUu-----CAGa--GCCGGCAgc -5'
18799 3' -60.3 NC_004683.1 + 21615 0.66 0.481206
Target:  5'- uGAGgGCgGCUggGgcggcaaCUgGGCCGUCu -3'
miRNA:   3'- gCUCgCGgCGGuuCa------GAgCCGGCAGc -5'
18799 3' -60.3 NC_004683.1 + 655 0.66 0.480232
Target:  5'- gCGGGaaccCCGCCAAGUCgcacaggUCGGCCaccUCGg -3'
miRNA:   3'- -GCUCgc--GGCGGUUCAG-------AGCCGGc--AGC- -5'
18799 3' -60.3 NC_004683.1 + 40861 0.66 0.471507
Target:  5'- gCGAGCG-CGUC-GGUCgCGGCgGUCa -3'
miRNA:   3'- -GCUCGCgGCGGuUCAGaGCCGgCAGc -5'
18799 3' -60.3 NC_004683.1 + 44860 0.66 0.470543
Target:  5'- gCGGGCacgcggcccgccGCCGCCGGGUCguagguuuggaucUCGGCgacgagcuUGUCGg -3'
miRNA:   3'- -GCUCG------------CGGCGGUUCAG-------------AGCCG--------GCAGC- -5'
18799 3' -60.3 NC_004683.1 + 46454 0.66 0.461908
Target:  5'- gGAGcCGCUGUUccGUC-CGGCCGcCGa -3'
miRNA:   3'- gCUC-GCGGCGGuuCAGaGCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 25553 0.66 0.458097
Target:  5'- uGGuCGCCGCCcuggccgcGGUCggcaacggcacggCGGCCGUCGc -3'
miRNA:   3'- gCUcGCGGCGGu-------UCAGa------------GCCGGCAGC- -5'
18799 3' -60.3 NC_004683.1 + 56977 0.66 0.452413
Target:  5'- gGGGUGCCGCugcaucggcgCAGGUCgggGGCCuGUCa -3'
miRNA:   3'- gCUCGCGGCG----------GUUCAGag-CCGG-CAGc -5'
18799 3' -60.3 NC_004683.1 + 18164 0.66 0.452413
Target:  5'- cCGaAGcCGCCGUCAcGGUCacCGGCuCGUCGc -3'
miRNA:   3'- -GC-UC-GCGGCGGU-UCAGa-GCCG-GCAGC- -5'
18799 3' -60.3 NC_004683.1 + 43587 0.67 0.433749
Target:  5'- aCGA-CGUCGCCGacGGUCUgCGGUCG-CGg -3'
miRNA:   3'- -GCUcGCGGCGGU--UCAGA-GCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 52384 0.67 0.433749
Target:  5'- uGAGCGCCuggGCCAGcuUUUCGGCggCGUCu -3'
miRNA:   3'- gCUCGCGG---CGGUUc-AGAGCCG--GCAGc -5'
18799 3' -60.3 NC_004683.1 + 51815 0.67 0.433749
Target:  5'- aGGGCGgCGCgGcacuGGUCgCGGCCGUa- -3'
miRNA:   3'- gCUCGCgGCGgU----UCAGaGCCGGCAgc -5'
18799 3' -60.3 NC_004683.1 + 23906 0.67 0.424586
Target:  5'- -cAGCGCCGCguAGgCguggCGGCCGaCGg -3'
miRNA:   3'- gcUCGCGGCGguUCaGa---GCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 50461 0.67 0.424586
Target:  5'- gCGGGUGCCaGCCAcAGUCggggcagCGGCCcaUCGc -3'
miRNA:   3'- -GCUCGCGG-CGGU-UCAGa------GCCGGc-AGC- -5'
18799 3' -60.3 NC_004683.1 + 43823 0.67 0.406613
Target:  5'- cCGGuGCGCUGCUGAc-CUCGGCCGcgcUCGg -3'
miRNA:   3'- -GCU-CGCGGCGGUUcaGAGCCGGC---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.