miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18799 3' -60.3 NC_004683.1 + 791 0.67 0.397807
Target:  5'- cCGAGgGCCGCCugcuUCUCGaaacCCGUCu -3'
miRNA:   3'- -GCUCgCGGCGGuuc-AGAGCc---GGCAGc -5'
18799 3' -60.3 NC_004683.1 + 42719 0.67 0.397807
Target:  5'- -cGGCgGCCGCCGAucucGUCgCGGgCGUCGu -3'
miRNA:   3'- gcUCG-CGGCGGUU----CAGaGCCgGCAGC- -5'
18799 3' -60.3 NC_004683.1 + 28029 0.68 0.380568
Target:  5'- -uGGCGCCGCCcggcGAGgcaggGGCCGUCa -3'
miRNA:   3'- gcUCGCGGCGG----UUCagag-CCGGCAGc -5'
18799 3' -60.3 NC_004683.1 + 2839 0.68 0.380568
Target:  5'- aCGAGU-CCGUCGGGUUUCuGGCCGagGa -3'
miRNA:   3'- -GCUCGcGGCGGUUCAGAG-CCGGCagC- -5'
18799 3' -60.3 NC_004683.1 + 7033 0.68 0.363012
Target:  5'- aCGAGCugcaccaccgcccGCCGCCAG---UCGGCCGccUCGg -3'
miRNA:   3'- -GCUCG-------------CGGCGGUUcagAGCCGGC--AGC- -5'
18799 3' -60.3 NC_004683.1 + 39628 0.68 0.355661
Target:  5'- uGGGCGCCGCCGGGguggCgacccgagGGCCGcuacgUCGa -3'
miRNA:   3'- gCUCGCGGCGGUUCa---Gag------CCGGC-----AGC- -5'
18799 3' -60.3 NC_004683.1 + 45647 0.68 0.355661
Target:  5'- aCGAGCGCCuugaccguggGCCAgaGGUUgUGGuuGUCGc -3'
miRNA:   3'- -GCUCGCGG----------CGGU--UCAGaGCCggCAGC- -5'
18799 3' -60.3 NC_004683.1 + 25639 0.68 0.347618
Target:  5'- gCGAGCuGCCGCCGA-UCgcggUGGCgGUCc -3'
miRNA:   3'- -GCUCG-CGGCGGUUcAGa---GCCGgCAGc -5'
18799 3' -60.3 NC_004683.1 + 18939 0.69 0.339706
Target:  5'- uCGGGCGCCGUgAAGUCgaugCuGCCGa-- -3'
miRNA:   3'- -GCUCGCGGCGgUUCAGa---GcCGGCagc -5'
18799 3' -60.3 NC_004683.1 + 26433 0.69 0.331925
Target:  5'- -cGGUGCCGCCGAGU--UGGCCG-Ca -3'
miRNA:   3'- gcUCGCGGCGGUUCAgaGCCGGCaGc -5'
18799 3' -60.3 NC_004683.1 + 22342 0.69 0.316758
Target:  5'- gGAcGCGCUGCCGGG-UUCGGUCGagGa -3'
miRNA:   3'- gCU-CGCGGCGGUUCaGAGCCGGCagC- -5'
18799 3' -60.3 NC_004683.1 + 52418 0.69 0.30212
Target:  5'- gCGAGUaCCGCCGaacgccGGaaUCGGCCGUCc -3'
miRNA:   3'- -GCUCGcGGCGGU------UCagAGCCGGCAGc -5'
18799 3' -60.3 NC_004683.1 + 27960 0.7 0.281149
Target:  5'- cCGGGCGgCGCCAAuGUCUCGcCCGa-- -3'
miRNA:   3'- -GCUCGCgGCGGUU-CAGAGCcGGCagc -5'
18799 3' -60.3 NC_004683.1 + 42576 0.7 0.27442
Target:  5'- cCGAGCG-CGCCGcggcGGUCggGGCCGgUCGu -3'
miRNA:   3'- -GCUCGCgGCGGU----UCAGagCCGGC-AGC- -5'
18799 3' -60.3 NC_004683.1 + 35810 0.7 0.26135
Target:  5'- gGGGUcCCGCCAGG-CUCaGGCgCGUCGu -3'
miRNA:   3'- gCUCGcGGCGGUUCaGAG-CCG-GCAGC- -5'
18799 3' -60.3 NC_004683.1 + 10037 0.71 0.242702
Target:  5'- aGAcucaCGCCGCCGAGccgUUCGGCCG-CGg -3'
miRNA:   3'- gCUc---GCGGCGGUUCa--GAGCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 19230 0.71 0.225174
Target:  5'- uGGcCGCCGCCGGGUCgaacgCGGUgcgCGUCGa -3'
miRNA:   3'- gCUcGCGGCGGUUCAGa----GCCG---GCAGC- -5'
18799 3' -60.3 NC_004683.1 + 30841 0.72 0.214095
Target:  5'- aCGGuGCGCCGgUGcGGUCgacagCGGCCGUCGa -3'
miRNA:   3'- -GCU-CGCGGCgGU-UCAGa----GCCGGCAGC- -5'
18799 3' -60.3 NC_004683.1 + 1341 0.72 0.212474
Target:  5'- uGAGCGCgacucgcucgauccCGCCGAG-UUCGGCCG-CGa -3'
miRNA:   3'- gCUCGCG--------------GCGGUUCaGAGCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 44451 0.72 0.198355
Target:  5'- gCGAucuCGCCGUCGAuGUagUCGGCCGUCGg -3'
miRNA:   3'- -GCUc--GCGGCGGUU-CAg-AGCCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.