miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18799 3' -60.3 NC_004683.1 + 21953 0.73 0.174364
Target:  5'- gCGGGCgGCCGCCGAGUUcacCGGCCaggCGg -3'
miRNA:   3'- -GCUCG-CGGCGGUUCAGa--GCCGGca-GC- -5'
18799 3' -60.3 NC_004683.1 + 2839 0.68 0.380568
Target:  5'- aCGAGU-CCGUCGGGUUUCuGGCCGagGa -3'
miRNA:   3'- -GCUCGcGGCGGUUCAGAG-CCGGCagC- -5'
18799 3' -60.3 NC_004683.1 + 43823 0.67 0.406613
Target:  5'- cCGGuGCGCUGCUGAc-CUCGGCCGcgcUCGg -3'
miRNA:   3'- -GCU-CGCGGCGGUUcaGAGCCGGC---AGC- -5'
18799 3' -60.3 NC_004683.1 + 23906 0.67 0.424586
Target:  5'- -cAGCGCCGCguAGgCguggCGGCCGaCGg -3'
miRNA:   3'- gcUCGCGGCGguUCaGa---GCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 18164 0.66 0.452413
Target:  5'- cCGaAGcCGCCGUCAcGGUCacCGGCuCGUCGc -3'
miRNA:   3'- -GC-UC-GCGGCGGU-UCAGa-GCCG-GCAGC- -5'
18799 3' -60.3 NC_004683.1 + 25553 0.66 0.458097
Target:  5'- uGGuCGCCGCCcuggccgcGGUCggcaacggcacggCGGCCGUCGc -3'
miRNA:   3'- gCUcGCGGCGGu-------UCAGa------------GCCGGCAGC- -5'
18799 3' -60.3 NC_004683.1 + 46454 0.66 0.461908
Target:  5'- gGAGcCGCUGUUccGUC-CGGCCGcCGa -3'
miRNA:   3'- gCUC-GCGGCGGuuCAGaGCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 21615 0.66 0.481206
Target:  5'- uGAGgGCgGCUggGgcggcaaCUgGGCCGUCu -3'
miRNA:   3'- gCUCgCGgCGGuuCa------GAgCCGGCAGc -5'
18799 3' -60.3 NC_004683.1 + 25119 0.66 0.500887
Target:  5'- -cGGCGuuGCC-GGUCcUGGCCGcCGu -3'
miRNA:   3'- gcUCGCggCGGuUCAGaGCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 39628 0.68 0.355661
Target:  5'- uGGGCGCCGCCGGGguggCgacccgagGGCCGcuacgUCGa -3'
miRNA:   3'- gCUCGCGGCGGUUCa---Gag------CCGGC-----AGC- -5'
18799 3' -60.3 NC_004683.1 + 25639 0.68 0.347618
Target:  5'- gCGAGCuGCCGCCGA-UCgcggUGGCgGUCc -3'
miRNA:   3'- -GCUCG-CGGCGGUUcAGa---GCCGgCAGc -5'
18799 3' -60.3 NC_004683.1 + 1341 0.72 0.212474
Target:  5'- uGAGCGCgacucgcucgauccCGCCGAG-UUCGGCCG-CGa -3'
miRNA:   3'- gCUCGCG--------------GCGGUUCaGAGCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 19230 0.71 0.225174
Target:  5'- uGGcCGCCGCCGGGUCgaacgCGGUgcgCGUCGa -3'
miRNA:   3'- gCUcGCGGCGGUUCAGa----GCCG---GCAGC- -5'
18799 3' -60.3 NC_004683.1 + 10037 0.71 0.242702
Target:  5'- aGAcucaCGCCGCCGAGccgUUCGGCCG-CGg -3'
miRNA:   3'- gCUc---GCGGCGGUUCa--GAGCCGGCaGC- -5'
18799 3' -60.3 NC_004683.1 + 35810 0.7 0.26135
Target:  5'- gGGGUcCCGCCAGG-CUCaGGCgCGUCGu -3'
miRNA:   3'- gCUCGcGGCGGUUCaGAG-CCG-GCAGC- -5'
18799 3' -60.3 NC_004683.1 + 42576 0.7 0.27442
Target:  5'- cCGAGCG-CGCCGcggcGGUCggGGCCGgUCGu -3'
miRNA:   3'- -GCUCGCgGCGGU----UCAGagCCGGC-AGC- -5'
18799 3' -60.3 NC_004683.1 + 27960 0.7 0.281149
Target:  5'- cCGGGCGgCGCCAAuGUCUCGcCCGa-- -3'
miRNA:   3'- -GCUCGCgGCGGUU-CAGAGCcGGCagc -5'
18799 3' -60.3 NC_004683.1 + 22342 0.69 0.316758
Target:  5'- gGAcGCGCUGCCGGG-UUCGGUCGagGa -3'
miRNA:   3'- gCU-CGCGGCGGUUCaGAGCCGGCagC- -5'
18799 3' -60.3 NC_004683.1 + 26433 0.69 0.331925
Target:  5'- -cGGUGCCGCCGAGU--UGGCCG-Ca -3'
miRNA:   3'- gcUCGCGGCGGUUCAgaGCCGGCaGc -5'
18799 3' -60.3 NC_004683.1 + 3819 0.66 0.51086
Target:  5'- cCGua-GCCGUCGAGggugaGGCCGUCGu -3'
miRNA:   3'- -GCucgCGGCGGUUCagag-CCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.