miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18801 3' -55.8 NC_004683.1 + 22065 0.67 0.567018
Target:  5'- -cUUGGCcgcgcgcGCCAGcACCaCCCGccUGGCCg -3'
miRNA:   3'- uaAGCCGa------CGGUUuUGG-GGGU--ACCGG- -5'
18801 3' -55.8 NC_004683.1 + 9491 0.67 0.567018
Target:  5'- -gUCGGUggcuuggGCgGcgGCCuCCCcgGGCCg -3'
miRNA:   3'- uaAGCCGa------CGgUuuUGG-GGGuaCCGG- -5'
18801 3' -55.8 NC_004683.1 + 10832 0.67 0.567018
Target:  5'- -aUUGGCgcugGCCGGuguGGCCaCCCucggagugauggGUGGCCg -3'
miRNA:   3'- uaAGCCGa---CGGUU---UUGG-GGG------------UACCGG- -5'
18801 3' -55.8 NC_004683.1 + 6283 0.67 0.567018
Target:  5'- --gUGGCUGaCCccaacggaaacgGAGGCCaaCCAUGGCCa -3'
miRNA:   3'- uaaGCCGAC-GG------------UUUUGGg-GGUACCGG- -5'
18801 3' -55.8 NC_004683.1 + 23986 0.68 0.556109
Target:  5'- -cUCGGCgcgaucaccacGCCAccGCCCgCCccGGCCg -3'
miRNA:   3'- uaAGCCGa----------CGGUuuUGGG-GGuaCCGG- -5'
18801 3' -55.8 NC_004683.1 + 2840 0.68 0.534485
Target:  5'- -gUUGGCcGCCGccGAGCUCgCCGcGGCCg -3'
miRNA:   3'- uaAGCCGaCGGU--UUUGGG-GGUaCCGG- -5'
18801 3' -55.8 NC_004683.1 + 25199 0.68 0.513165
Target:  5'- --aCGGCgGCCAGGaccggcaacGCCgCCGgguUGGCCa -3'
miRNA:   3'- uaaGCCGaCGGUUU---------UGGgGGU---ACCGG- -5'
18801 3' -55.8 NC_004683.1 + 48979 0.68 0.513165
Target:  5'- --aUGGCUGCCGcacggugauAGCCCUCAccgGGUCa -3'
miRNA:   3'- uaaGCCGACGGUu--------UUGGGGGUa--CCGG- -5'
18801 3' -55.8 NC_004683.1 + 51647 0.68 0.513165
Target:  5'- -gUCGcGCUGCCGGggUUCgUugGUGGCCa -3'
miRNA:   3'- uaAGC-CGACGGUUuuGGGgG--UACCGG- -5'
18801 3' -55.8 NC_004683.1 + 1931 0.69 0.492203
Target:  5'- -aUCGGCcagagGCUucGAGCCCUgGUGGCg -3'
miRNA:   3'- uaAGCCGa----CGGu-UUUGGGGgUACCGg -5'
18801 3' -55.8 NC_004683.1 + 33850 0.69 0.48187
Target:  5'- --gCGGUcGCCGGGACCaCCgCA-GGCCa -3'
miRNA:   3'- uaaGCCGaCGGUUUUGG-GG-GUaCCGG- -5'
18801 3' -55.8 NC_004683.1 + 47288 0.69 0.480843
Target:  5'- cAUUCGaucucacGCUGCCGAgccAGCCCgCgAUGGUCg -3'
miRNA:   3'- -UAAGC-------CGACGGUU---UUGGG-GgUACCGG- -5'
18801 3' -55.8 NC_004683.1 + 36545 0.69 0.471643
Target:  5'- -cUCGGUUGCCAGAuugcuuGCUCCCuUGGa- -3'
miRNA:   3'- uaAGCCGACGGUUU------UGGGGGuACCgg -5'
18801 3' -55.8 NC_004683.1 + 14760 0.69 0.461528
Target:  5'- -gUgGGCgcguauggGCCGcAACCCCgAUGGCUc -3'
miRNA:   3'- uaAgCCGa-------CGGUuUUGGGGgUACCGG- -5'
18801 3' -55.8 NC_004683.1 + 11891 0.69 0.451528
Target:  5'- --cCGGCcccaCCAGcACCCCCcgGGCUg -3'
miRNA:   3'- uaaGCCGac--GGUUuUGGGGGuaCCGG- -5'
18801 3' -55.8 NC_004683.1 + 51250 0.69 0.451528
Target:  5'- -cUCGGCggcgcGCCGGAuccaguuCCgCCaCGUGGCCg -3'
miRNA:   3'- uaAGCCGa----CGGUUUu------GG-GG-GUACCGG- -5'
18801 3' -55.8 NC_004683.1 + 16694 0.69 0.451528
Target:  5'- --cUGGCUGCgGAu-CCCCC--GGCCg -3'
miRNA:   3'- uaaGCCGACGgUUuuGGGGGuaCCGG- -5'
18801 3' -55.8 NC_004683.1 + 30015 0.7 0.422263
Target:  5'- -gUCGGCUGCCcgccGAGCCCgagagguaugggCCAUGGg- -3'
miRNA:   3'- uaAGCCGACGGu---UUUGGG------------GGUACCgg -5'
18801 3' -55.8 NC_004683.1 + 39783 0.7 0.394167
Target:  5'- -aUUGGCUGCCGuAGACCUUguUGGUg -3'
miRNA:   3'- uaAGCCGACGGU-UUUGGGGguACCGg -5'
18801 3' -55.8 NC_004683.1 + 7404 0.71 0.385074
Target:  5'- -cUUGGCUGCCAGcACCgCCGcGGUUg -3'
miRNA:   3'- uaAGCCGACGGUUuUGGgGGUaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.