miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18801 5' -64.4 NC_004683.1 + 13355 0.66 0.309987
Target:  5'- cCGGGCUguagauauccgcugCGGuCGacGGCGacGCCGAUGCGGu -3'
miRNA:   3'- aGCCCGA--------------GCC-GC--CCGU--CGGCUGCGUC- -5'
18801 5' -64.4 NC_004683.1 + 21792 0.66 0.291017
Target:  5'- gUCGGGUaCGGCcacGGGCGGCguugGugGgCAGa -3'
miRNA:   3'- -AGCCCGaGCCG---CCCGUCGg---CugC-GUC- -5'
18801 5' -64.4 NC_004683.1 + 23059 0.66 0.291017
Target:  5'- gUCGGccuGCUCGGCGGccugguGCucaCCGGCGCGc -3'
miRNA:   3'- -AGCC---CGAGCCGCC------CGuc-GGCUGCGUc -5'
18801 5' -64.4 NC_004683.1 + 54120 0.66 0.291017
Target:  5'- gCGGaGCUgGGCGaGUucGUCGGCGCGGa -3'
miRNA:   3'- aGCC-CGAgCCGCcCGu-CGGCUGCGUC- -5'
18801 5' -64.4 NC_004683.1 + 15612 0.66 0.284225
Target:  5'- aUCGuGGC-C-GCGGGCAcGCCGcUGCGGa -3'
miRNA:   3'- -AGC-CCGaGcCGCCCGU-CGGCuGCGUC- -5'
18801 5' -64.4 NC_004683.1 + 21601 0.66 0.284225
Target:  5'- aUCGGcGCguggGGUgaGGGCGGCUGGgGCGGc -3'
miRNA:   3'- -AGCC-CGag--CCG--CCCGUCGGCUgCGUC- -5'
18801 5' -64.4 NC_004683.1 + 31629 0.66 0.284225
Target:  5'- gUCGGacccaaccgaGCUCGcCGGcGUGGCCGACGCc- -3'
miRNA:   3'- -AGCC----------CGAGCcGCC-CGUCGGCUGCGuc -5'
18801 5' -64.4 NC_004683.1 + 43921 0.66 0.284225
Target:  5'- cCGGGCUCGagacCGaGcGCGGCCGAgGuCAGc -3'
miRNA:   3'- aGCCCGAGCc---GC-C-CGUCGGCUgC-GUC- -5'
18801 5' -64.4 NC_004683.1 + 23816 0.66 0.277559
Target:  5'- aUCGGGgUCGGCgccgGGGUgguGCCGcCGCc- -3'
miRNA:   3'- -AGCCCgAGCCG----CCCGu--CGGCuGCGuc -5'
18801 5' -64.4 NC_004683.1 + 51950 0.66 0.277559
Target:  5'- aCGGaucGCgCGGUGGuGCAGCuCGAgCGCGGu -3'
miRNA:   3'- aGCC---CGaGCCGCC-CGUCG-GCU-GCGUC- -5'
18801 5' -64.4 NC_004683.1 + 31893 0.67 0.271019
Target:  5'- aUCGucGGCUCGGgcCGGuGCAGCCaGCGgGGc -3'
miRNA:   3'- -AGC--CCGAGCC--GCC-CGUCGGcUGCgUC- -5'
18801 5' -64.4 NC_004683.1 + 40300 0.67 0.271019
Target:  5'- gCGGGCcugcUCGGCGucguaGGCAGCCcGgGCGa -3'
miRNA:   3'- aGCCCG----AGCCGC-----CCGUCGGcUgCGUc -5'
18801 5' -64.4 NC_004683.1 + 51083 0.67 0.269081
Target:  5'- gCGGGCcgagcaugcgaaguUCaccgacuacuGGCGGggcGCGGCCGGCGCGa -3'
miRNA:   3'- aGCCCG--------------AG----------CCGCC---CGUCGGCUGCGUc -5'
18801 5' -64.4 NC_004683.1 + 39933 0.67 0.264603
Target:  5'- -gGGGCgaguugCGGUGGGUgcaGGuuGGCGCu- -3'
miRNA:   3'- agCCCGa-----GCCGCCCG---UCggCUGCGuc -5'
18801 5' -64.4 NC_004683.1 + 24790 0.67 0.25831
Target:  5'- gCGGGCguugCGGuCGcGGCGGC--GCGCGGc -3'
miRNA:   3'- aGCCCGa---GCC-GC-CCGUCGgcUGCGUC- -5'
18801 5' -64.4 NC_004683.1 + 34026 0.67 0.25831
Target:  5'- cCGGuGC-CGGCcGaucCAGCCGACGCGGc -3'
miRNA:   3'- aGCC-CGaGCCGcCc--GUCGGCUGCGUC- -5'
18801 5' -64.4 NC_004683.1 + 25573 0.67 0.25831
Target:  5'- gUCGGcaaCGGCacGGCGGCCGuCGCAGu -3'
miRNA:   3'- -AGCCcgaGCCGc-CCGUCGGCuGCGUC- -5'
18801 5' -64.4 NC_004683.1 + 6559 0.67 0.25831
Target:  5'- --cGGCUCGGCGcuGGCGuccucgacGCUGGCGCGa -3'
miRNA:   3'- agcCCGAGCCGC--CCGU--------CGGCUGCGUc -5'
18801 5' -64.4 NC_004683.1 + 6938 0.67 0.252141
Target:  5'- cCGaGGCggccgacuggCGGCGGGCGGUgG-UGCAGc -3'
miRNA:   3'- aGC-CCGa---------GCCGCCCGUCGgCuGCGUC- -5'
18801 5' -64.4 NC_004683.1 + 5921 0.67 0.252141
Target:  5'- -aGGcGcCUUGGCGGcGguGCCG-CGCGGc -3'
miRNA:   3'- agCC-C-GAGCCGCC-CguCGGCuGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.