miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18802 3' -51.5 NC_004683.1 + 21708 0.66 0.915777
Target:  5'- gGGUGUAGacggcccaGUUgCCGCCCCAGCc--- -3'
miRNA:   3'- gCCACGUUg-------UAA-GGUGGGGUUGcuuc -5'
18802 3' -51.5 NC_004683.1 + 37185 0.66 0.909253
Target:  5'- gCGGccguUGUGACGacUCacugGCCCCGACGAGGg -3'
miRNA:   3'- -GCC----ACGUUGUa-AGg---UGGGGUUGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 12307 0.66 0.909253
Target:  5'- cCGG-GC-GCuc-CCGCCCCGGCGGGc -3'
miRNA:   3'- -GCCaCGuUGuaaGGUGGGGUUGCUUc -5'
18802 3' -51.5 NC_004683.1 + 20438 0.66 0.909253
Target:  5'- gCGGUGCAGgGgccaCCGCgCCGAUGGc- -3'
miRNA:   3'- -GCCACGUUgUaa--GGUGgGGUUGCUuc -5'
18802 3' -51.5 NC_004683.1 + 54015 0.66 0.907914
Target:  5'- aGG-GCAACGgcuggaccaucaUCCGCgCCGACGAAc -3'
miRNA:   3'- gCCaCGUUGUa-----------AGGUGgGGUUGCUUc -5'
18802 3' -51.5 NC_004683.1 + 31353 0.66 0.90724
Target:  5'- uCGGgGCcacaaccgucgucgGACGUUCCGCUCCGAUGuGGc -3'
miRNA:   3'- -GCCaCG--------------UUGUAAGGUGGGGUUGCuUC- -5'
18802 3' -51.5 NC_004683.1 + 18635 0.66 0.905201
Target:  5'- cCGGUGuCGGCAggcugauggcgccggUUggguuguaaCCACCCCAugGAAc -3'
miRNA:   3'- -GCCAC-GUUGU---------------AA---------GGUGGGGUugCUUc -5'
18802 3' -51.5 NC_004683.1 + 21406 0.66 0.902443
Target:  5'- gCGGUGCua---UCCGCgCCCAGucCGAGGu -3'
miRNA:   3'- -GCCACGuuguaAGGUG-GGGUU--GCUUC- -5'
18802 3' -51.5 NC_004683.1 + 45696 0.66 0.895352
Target:  5'- uGGUGCuGCA--CUACCCgAcuACGGAGg -3'
miRNA:   3'- gCCACGuUGUaaGGUGGGgU--UGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 53656 0.66 0.887981
Target:  5'- gCGGUGCGGCcggcgUCUGCCgCGGCGuuGc -3'
miRNA:   3'- -GCCACGUUGua---AGGUGGgGUUGCuuC- -5'
18802 3' -51.5 NC_004683.1 + 44276 0.66 0.880338
Target:  5'- gCGGcucgacGCGGCGaUCCGCgCCGACGAu- -3'
miRNA:   3'- -GCCa-----CGUUGUaAGGUGgGGUUGCUuc -5'
18802 3' -51.5 NC_004683.1 + 43462 0.66 0.880338
Target:  5'- gCGGuUGCGGCg--CCGCCCCucuuCGAu- -3'
miRNA:   3'- -GCC-ACGUUGuaaGGUGGGGuu--GCUuc -5'
18802 3' -51.5 NC_004683.1 + 24388 0.67 0.864256
Target:  5'- cCGGUGUcuucGACGaggCCACCgCGGCGAu- -3'
miRNA:   3'- -GCCACG----UUGUaa-GGUGGgGUUGCUuc -5'
18802 3' -51.5 NC_004683.1 + 13446 0.67 0.864256
Target:  5'- ---gGCAGCGUgCCGCCgCCAcCGGAGa -3'
miRNA:   3'- gccaCGUUGUAaGGUGG-GGUuGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 37436 0.67 0.855831
Target:  5'- gGGU-CGAUAUacgCCACUUCGGCGAGGa -3'
miRNA:   3'- gCCAcGUUGUAa--GGUGGGGUUGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 43568 0.67 0.838255
Target:  5'- gCGGUcGCGGCA----GCCCCcACGAGGg -3'
miRNA:   3'- -GCCA-CGUUGUaaggUGGGGuUGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 3868 0.67 0.838255
Target:  5'- aGGUGCAguucgaccACGgccgCCACCCCAugauCGGc- -3'
miRNA:   3'- gCCACGU--------UGUaa--GGUGGGGUu---GCUuc -5'
18802 3' -51.5 NC_004683.1 + 16021 0.68 0.819772
Target:  5'- aGGgcgcgGCAACGUUCCGCaCCAAgGGc- -3'
miRNA:   3'- gCCa----CGUUGUAAGGUGgGGUUgCUuc -5'
18802 3' -51.5 NC_004683.1 + 38055 0.68 0.800463
Target:  5'- aCGG-GCGccGCGUgCCGCUCgGACGAAGc -3'
miRNA:   3'- -GCCaCGU--UGUAaGGUGGGgUUGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 16908 0.68 0.790526
Target:  5'- uCGGUGaag---UUCACaCCCAGCGAGGg -3'
miRNA:   3'- -GCCACguuguaAGGUG-GGGUUGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.