miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18802 3' -51.5 NC_004683.1 + 3868 0.67 0.838255
Target:  5'- aGGUGCAguucgaccACGgccgCCACCCCAugauCGGc- -3'
miRNA:   3'- gCCACGU--------UGUaa--GGUGGGGUu---GCUuc -5'
18802 3' -51.5 NC_004683.1 + 8855 0.7 0.727697
Target:  5'- uCGGUGuCGAUGcUCgGCCgCGACGAGGg -3'
miRNA:   3'- -GCCAC-GUUGUaAGgUGGgGUUGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 12213 0.69 0.73849
Target:  5'- uGGUGCGAUuc-CCACgCCCGcCGggGc -3'
miRNA:   3'- gCCACGUUGuaaGGUG-GGGUuGCuuC- -5'
18802 3' -51.5 NC_004683.1 + 12307 0.66 0.909253
Target:  5'- cCGG-GC-GCuc-CCGCCCCGGCGGGc -3'
miRNA:   3'- -GCCaCGuUGuaaGGUGGGGUUGCUUc -5'
18802 3' -51.5 NC_004683.1 + 13446 0.67 0.864256
Target:  5'- ---gGCAGCGUgCCGCCgCCAcCGGAGa -3'
miRNA:   3'- gccaCGUUGUAaGGUGG-GGUuGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 16021 0.68 0.819772
Target:  5'- aGGgcgcgGCAACGUUCCGCaCCAAgGGc- -3'
miRNA:   3'- gCCa----CGUUGUAAGGUGgGGUUgCUuc -5'
18802 3' -51.5 NC_004683.1 + 16908 0.68 0.790526
Target:  5'- uCGGUGaag---UUCACaCCCAGCGAGGg -3'
miRNA:   3'- -GCCACguuguaAGGUG-GGGUUGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 18635 0.66 0.905201
Target:  5'- cCGGUGuCGGCAggcugauggcgccggUUggguuguaaCCACCCCAugGAAc -3'
miRNA:   3'- -GCCAC-GUUGU---------------AA---------GGUGGGGUugCUUc -5'
18802 3' -51.5 NC_004683.1 + 19201 0.71 0.650028
Target:  5'- aGGUGCcgucGCAcUCCACccgcgcgcauCCCAGCGggGu -3'
miRNA:   3'- gCCACGu---UGUaAGGUG----------GGGUUGCuuC- -5'
18802 3' -51.5 NC_004683.1 + 20438 0.66 0.909253
Target:  5'- gCGGUGCAGgGgccaCCGCgCCGAUGGc- -3'
miRNA:   3'- -GCCACGUUgUaa--GGUGgGGUUGCUuc -5'
18802 3' -51.5 NC_004683.1 + 21406 0.66 0.902443
Target:  5'- gCGGUGCua---UCCGCgCCCAGucCGAGGu -3'
miRNA:   3'- -GCCACGuuguaAGGUG-GGGUU--GCUUC- -5'
18802 3' -51.5 NC_004683.1 + 21708 0.66 0.915777
Target:  5'- gGGUGUAGacggcccaGUUgCCGCCCCAGCc--- -3'
miRNA:   3'- gCCACGUUg-------UAA-GGUGGGGUUGcuuc -5'
18802 3' -51.5 NC_004683.1 + 23699 0.7 0.727697
Target:  5'- gGGUucuCGACGUUCCGCCgCGGCGGc- -3'
miRNA:   3'- gCCAc--GUUGUAAGGUGGgGUUGCUuc -5'
18802 3' -51.5 NC_004683.1 + 23727 0.73 0.527492
Target:  5'- cCGGcgGCGGCA--CCACCCCGGCGccGa -3'
miRNA:   3'- -GCCa-CGUUGUaaGGUGGGGUUGCuuC- -5'
18802 3' -51.5 NC_004683.1 + 24388 0.67 0.864256
Target:  5'- cCGGUGUcuucGACGaggCCACCgCGGCGAu- -3'
miRNA:   3'- -GCCACG----UUGUaa-GGUGGgGUUGCUuc -5'
18802 3' -51.5 NC_004683.1 + 31352 1.1 0.002162
Target:  5'- cCGGUGCAACAUUCCACCCCAACGAAGa -3'
miRNA:   3'- -GCCACGUUGUAAGGUGGGGUUGCUUC- -5'
18802 3' -51.5 NC_004683.1 + 31353 0.66 0.90724
Target:  5'- uCGGgGCcacaaccgucgucgGACGUUCCGCUCCGAUGuGGc -3'
miRNA:   3'- -GCCaCG--------------UUGUAAGGUGGGGUUGCuUC- -5'
18802 3' -51.5 NC_004683.1 + 31530 0.71 0.638771
Target:  5'- uGGUGuCGGCGUcggCCACgCCGGCGAGc -3'
miRNA:   3'- gCCAC-GUUGUAa--GGUGgGGUUGCUUc -5'
18802 3' -51.5 NC_004683.1 + 32878 0.74 0.453969
Target:  5'- uGGUGCGACG-UCgACCUCGACGcGAGa -3'
miRNA:   3'- gCCACGUUGUaAGgUGGGGUUGC-UUC- -5'
18802 3' -51.5 NC_004683.1 + 37185 0.66 0.909253
Target:  5'- gCGGccguUGUGACGacUCacugGCCCCGACGAGGg -3'
miRNA:   3'- -GCC----ACGUUGUa-AGg---UGGGGUUGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.