miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18802 5' -58.3 NC_004683.1 + 15942 0.66 0.581724
Target:  5'- cGGCCUCAgCGGCcuGGccgaUGUUGCcgUGCa -3'
miRNA:   3'- -UCGGAGUgGCCG--CCa---ACAGCGagACG- -5'
18802 5' -58.3 NC_004683.1 + 49998 0.66 0.581724
Target:  5'- cGaCCUCugUGGUGGc-GUCGCgguaUGCg -3'
miRNA:   3'- uC-GGAGugGCCGCCaaCAGCGag--ACG- -5'
18802 5' -58.3 NC_004683.1 + 43477 0.66 0.560443
Target:  5'- gAGCCggaUCGCCuGGCGGUUGcggCGC-C-GCc -3'
miRNA:   3'- -UCGG---AGUGG-CCGCCAACa--GCGaGaCG- -5'
18802 5' -58.3 NC_004683.1 + 54086 0.66 0.560443
Target:  5'- gAGCgUCACCGGCGa--GUCGaggUGCa -3'
miRNA:   3'- -UCGgAGUGGCCGCcaaCAGCgagACG- -5'
18802 5' -58.3 NC_004683.1 + 40564 0.66 0.539382
Target:  5'- cGGCgCUCACCcccucGGCGGUgugcacgCGCcgacacUCUGCg -3'
miRNA:   3'- -UCG-GAGUGG-----CCGCCAaca----GCG------AGACG- -5'
18802 5' -58.3 NC_004683.1 + 44531 0.66 0.539382
Target:  5'- cGUCgggCGCCGGCGcg-GUgGCgcgCUGCg -3'
miRNA:   3'- uCGGa--GUGGCCGCcaaCAgCGa--GACG- -5'
18802 5' -58.3 NC_004683.1 + 39958 0.67 0.518596
Target:  5'- uGGCgCUCGCCGGCuGGUgacUCGCgUCgagGUu -3'
miRNA:   3'- -UCG-GAGUGGCCG-CCAac-AGCG-AGa--CG- -5'
18802 5' -58.3 NC_004683.1 + 16186 0.67 0.518596
Target:  5'- cAGCCgcaCGCCGGCGGUuucgacgaUGaCGCcgcgcaguguUUUGCg -3'
miRNA:   3'- -UCGGa--GUGGCCGCCA--------ACaGCG----------AGACG- -5'
18802 5' -58.3 NC_004683.1 + 31286 0.67 0.508322
Target:  5'- uGUUgCACCGGgGGUUGU-GCagCUGCg -3'
miRNA:   3'- uCGGaGUGGCCgCCAACAgCGa-GACG- -5'
18802 5' -58.3 NC_004683.1 + 53724 0.67 0.508322
Target:  5'- cAGCCUCAgCcGCGGccagGUCGCg--GCg -3'
miRNA:   3'- -UCGGAGUgGcCGCCaa--CAGCGagaCG- -5'
18802 5' -58.3 NC_004683.1 + 51902 0.67 0.488041
Target:  5'- cAGCUUCACUGGUGGaucuccUGUCGgUUgagguUGCg -3'
miRNA:   3'- -UCGGAGUGGCCGCCa-----ACAGCgAG-----ACG- -5'
18802 5' -58.3 NC_004683.1 + 54946 0.67 0.468149
Target:  5'- cGCuCUCACCGGCGcc---CGCggCUGCa -3'
miRNA:   3'- uCG-GAGUGGCCGCcaacaGCGa-GACG- -5'
18802 5' -58.3 NC_004683.1 + 53525 0.67 0.468149
Target:  5'- aAGcCCUCGgCGGCcaGGUUGUCG-UCcGCg -3'
miRNA:   3'- -UC-GGAGUgGCCG--CCAACAGCgAGaCG- -5'
18802 5' -58.3 NC_004683.1 + 51053 0.68 0.448681
Target:  5'- cGCCUUGgCGGCGGgUGcggccggagCGCUgUGCg -3'
miRNA:   3'- uCGGAGUgGCCGCCaACa--------GCGAgACG- -5'
18802 5' -58.3 NC_004683.1 + 40875 0.68 0.419417
Target:  5'- cGGCCUCGCCGucggcgaGCGcGUcgGUCGCg--GCg -3'
miRNA:   3'- -UCGGAGUGGC-------CGC-CAa-CAGCGagaCG- -5'
18802 5' -58.3 NC_004683.1 + 31491 0.7 0.350358
Target:  5'- gAGCCugUCACUGGUGGcgGUCGCcgCagUGCu -3'
miRNA:   3'- -UCGG--AGUGGCCGCCaaCAGCGa-G--ACG- -5'
18802 5' -58.3 NC_004683.1 + 28403 0.7 0.334206
Target:  5'- cAGCCggggCGCgGGCGGUUccgcucaCGCUCUGg -3'
miRNA:   3'- -UCGGa---GUGgCCGCCAAca-----GCGAGACg -5'
18802 5' -58.3 NC_004683.1 + 45642 0.7 0.325557
Target:  5'- cGCCUUgACCGugggccagagguuGUGGUUGUCGCggcgccgCUGCu -3'
miRNA:   3'- uCGGAG-UGGC-------------CGCCAACAGCGa------GACG- -5'
18802 5' -58.3 NC_004683.1 + 5918 0.71 0.311013
Target:  5'- cGCCUUGgCGGCGGUgccgCGCggcgagCUGCu -3'
miRNA:   3'- uCGGAGUgGCCGCCAaca-GCGa-----GACG- -5'
18802 5' -58.3 NC_004683.1 + 4471 0.74 0.182332
Target:  5'- cGGCCUCAUCGGCGugggacucGUcGUCGCUggcgucucgCUGCg -3'
miRNA:   3'- -UCGGAGUGGCCGC--------CAaCAGCGA---------GACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.