miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18803 3' -56.1 NC_004683.1 + 7935 0.66 0.743346
Target:  5'- uCGGGGUGucGgGUCCGAcaCGGCGGa-- -3'
miRNA:   3'- -GCCUCGCcuUgCAGGCU--GCUGCCaac -5'
18803 3' -56.1 NC_004683.1 + 42848 0.66 0.733113
Target:  5'- gCGGAauuucGCGGGACa--CGACGGCGGc-- -3'
miRNA:   3'- -GCCU-----CGCCUUGcagGCUGCUGCCaac -5'
18803 3' -56.1 NC_004683.1 + 19407 0.66 0.722784
Target:  5'- uCGGcuGgGGAACGUCCGAaGACGcGg-- -3'
miRNA:   3'- -GCCu-CgCCUUGCAGGCUgCUGC-Caac -5'
18803 3' -56.1 NC_004683.1 + 12233 0.67 0.688147
Target:  5'- cCGGGGCgGGAGCGcCCGGCGugccgaugcccggcGCuGGUg- -3'
miRNA:   3'- -GCCUCG-CCUUGCaGGCUGC--------------UG-CCAac -5'
18803 3' -56.1 NC_004683.1 + 9023 0.67 0.63794
Target:  5'- cCGGgcagcuccaccAGCGGAuuuccguugGCGUCCGACagaGGCaGGUUGu -3'
miRNA:   3'- -GCC-----------UCGCCU---------UGCAGGCUG---CUG-CCAAC- -5'
18803 3' -56.1 NC_004683.1 + 52298 0.67 0.63794
Target:  5'- cCGaGGCGGAccCGaCCGACGACGGc-- -3'
miRNA:   3'- -GCcUCGCCUu-GCaGGCUGCUGCCaac -5'
18803 3' -56.1 NC_004683.1 + 54125 0.67 0.636867
Target:  5'- uCGGAGCGGAGCugggcgaGUUCGuCGGCGcGg-- -3'
miRNA:   3'- -GCCUCGCCUUG-------CAGGCuGCUGC-Caac -5'
18803 3' -56.1 NC_004683.1 + 45560 0.68 0.615412
Target:  5'- uCGGuGCGGGgcGCGUCgCGcgcgagaagugcuGCGGCGGUg- -3'
miRNA:   3'- -GCCuCGCCU--UGCAG-GC-------------UGCUGCCAac -5'
18803 3' -56.1 NC_004683.1 + 5847 0.68 0.584419
Target:  5'- gCGGuGacuGGAGCGaUCuCGGCGGCGGUg- -3'
miRNA:   3'- -GCCuCg--CCUUGC-AG-GCUGCUGCCAac -5'
18803 3' -56.1 NC_004683.1 + 35131 0.68 0.574855
Target:  5'- aCGGucGGUGGAGacCGUCCGGCGcaagaaugaacucauCGGUUGa -3'
miRNA:   3'- -GCC--UCGCCUU--GCAGGCUGCu--------------GCCAAC- -5'
18803 3' -56.1 NC_004683.1 + 50491 0.69 0.541183
Target:  5'- uCGGAGCGGAucGCGUCgGuuucaugggacgcGCGGCuGGUg- -3'
miRNA:   3'- -GCCUCGCCU--UGCAGgC-------------UGCUG-CCAac -5'
18803 3' -56.1 NC_004683.1 + 11704 0.69 0.531827
Target:  5'- gGGAGCGcugcAGCGgcaCGcCGACGGUUGg -3'
miRNA:   3'- gCCUCGCc---UUGCag-GCuGCUGCCAAC- -5'
18803 3' -56.1 NC_004683.1 + 54078 0.7 0.50109
Target:  5'- cCGGuGUGGAGCGUcaCCGGCGAgucgaGGUg- -3'
miRNA:   3'- -GCCuCGCCUUGCA--GGCUGCUg----CCAac -5'
18803 3' -56.1 NC_004683.1 + 51693 0.71 0.45076
Target:  5'- gGGGGCGGGcuugaucGCGUCgagcucggccUGGCGACGGUc- -3'
miRNA:   3'- gCCUCGCCU-------UGCAG----------GCUGCUGCCAac -5'
18803 3' -56.1 NC_004683.1 + 21087 0.73 0.345241
Target:  5'- uCGGugcugucgcuGCGGGACGgUCGGCGACGGUg- -3'
miRNA:   3'- -GCCu---------CGCCUUGCaGGCUGCUGCCAac -5'
18803 3' -56.1 NC_004683.1 + 20561 0.75 0.263877
Target:  5'- gCGGguuuccuGGCGGGGCGUCUgguGGCGGCGGUg- -3'
miRNA:   3'- -GCC-------UCGCCUUGCAGG---CUGCUGCCAac -5'
18803 3' -56.1 NC_004683.1 + 31444 1.08 0.001392
Target:  5'- uCGGAGCGGAACGUCCGACGACGGUUGu -3'
miRNA:   3'- -GCCUCGCCUUGCAGGCUGCUGCCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.